Factsheet for PGSC0003DMT400070566

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018390.2.1	Tomato	nucleus	98.28	52.86
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.69	33.12
KRH39246	Soybean	nucleus, plastid	59.2	31.64
KRH41601	Soybean	nucleus, plastid	58.33	31.14
VIT_11s0016g04240.t01	Wine grape	nucleus	59.48	28.71
KRH48444	Soybean	nucleus	57.76	27.96
KRH60306	Soybean	nucleus	57.76	27.88
GSMUA_Achr4P01640_001	Banana	nucleus	49.43	26.75
Zm00001d024824_P001	Maize	cytosol	34.2	25.27
Zm00001d041715_P003	Maize	nucleus	46.26	23.1
PGSC0003DMT400019884	Potato	cytosol	24.43	23.04
Os12t0533500-01	Rice	nucleus	46.55	22.91
TraesCS5D01G109600.1	Wheat	nucleus	45.11	22.53
TraesCS5A01G097100.1	Wheat	nucleus	44.83	22.38
TraesCS5B01G102800.1	Wheat	nucleus	44.54	22.24
EES17116	Sorghum	nucleus	43.97	21.92
Zm00001d023897_P003	Maize	cytosol	44.83	21.67
Os05t0145400-01	Rice	cytosol	36.21	20.76
TraesCS1A01G108900.1	Wheat	cytosol	35.92	20.7
HORVU1Hr1G019570.1	Barley	nucleus	36.49	20.68
HORVU7Hr1G096840.1	Barley	plastid	45.11	20.66
TraesCS1B01G108200.1	Wheat	cytosol	35.92	20.33
TraesCS1D01G090400.1	Wheat	cytosol	35.92	20.33
KXG21293	Sorghum	cytosol	33.05	19.26
AT2G18870.1	Thale cress	nucleus, plasma membrane	12.64	18.41
CDX77427	Canola	nucleus	31.32	18.32
Bra015039.1-P	Field mustard	nucleus	30.17	17.65
CDY39555	Canola	nucleus	31.03	16.69
GSMUA_Achr10P...	Banana	mitochondrion	9.77	16.11
PGSC0003DMT400024218	Potato	cytosol	18.68	10.92
CDX77426	Canola	cytosol	8.91	9.14
Bra015040.1-P	Field mustard	cytosol	8.05	8.26
GSMUA_Achr10P...	Banana	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400070566	EnsemblPlantsGene:PGSC0003DMG400027427	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:FN3_dom
InterPro:FN3_sf	InterPro:IPR003961	PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFscan:PS50853	PGSC:PGSC0003DMG400027427
SUPFAM:SSF49265	UniParc:UPI0002956657	UniProt:M1CMC6	MapMan:35.1	:	:

Description

Fibronectin type III domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027427]

Coordinates

chr5:+:19106798..19109361

Molecular Weight (calculated)

38937.3 Da

IEP (calculated)

5.504

GRAVY (calculated)

-0.691

Length

348 amino acids

Sequence
(BLAST)

001: MAREDTYTKE PVCVFPRTQR RILISNLQPC TEYSFRIVSY TEASDVGHSE AKCFTKSVEI IHRKSNLVAG HKIQVNQDTR GSSGSKEGYY TGKDIEFDSG
101: FKVRDLGKIL RLAWAQQQGC LEGFTGPAST KCCESCTVKP EPVQEDRKPS TSRQLDLNVA SVPDLNEELT PSSRDEDNCC TLELTVEADD DATSHDNERN
201: GLARSHGSGD SQNWNQGKNG DVSAGDSQME GCRKRGASNN GETHDSDSTL INGSPIRIRT GGLDENFEYC VKIIRWLECQ GLIEKEFRLK LLTWFSLRST
301: EQERRVVNTF IQTLIDDPSS LAGQLVDTFS EIVSSKRPRN GFCCKLWH

Best Arabidopsis Sequence Match ( AT3G24440.2 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.