Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60306 | Soybean | nucleus | 67.41 | 67.41 |
| KRH39246 | Soybean | nucleus, plastid | 60.33 | 66.82 |
| KRH48444 | Soybean | nucleus | 66.16 | 66.34 |
| KRH41601 | Soybean | nucleus, plastid | 58.95 | 65.18 |
| Solyc05g018390.2.1 | Tomato | nucleus | 58.25 | 64.92 |
| PGSC0003DMT400070566 | Potato | cytosol | 28.71 | 59.48 |
| CDX77426 | Canola | cytosol | 23.02 | 48.97 |
| Bra015040.1-P | Field mustard | cytosol | 22.88 | 48.67 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 54.78 | 46.31 |
| CDX77427 | Canola | nucleus | 36.89 | 44.71 |
| Bra015039.1-P | Field mustard | nucleus | 36.62 | 44.37 |
| CDY39555 | Canola | nucleus | 37.03 | 41.27 |
| VIT_18s0001g07650.t01 | Wine grape | cytosol | 29.13 | 38.39 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 32.32 | 31.57 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.74 | 26.36 |
Protein Annotations
| EntrezGene:100256041 | wikigene:100256041 | MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | ProteinID:CCB51535 | ProteinID:CCB51535.1 |
| UniProt:F6HH39 | InterPro:FN3_dom | InterPro:FN3_sf | EMBL:FN595756 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | EntrezGene:LOC100256041 | wikigene:LOC100256041 |
| InterPro:Oberon_PHD | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF17 |
| SUPFAM:SSF49265 | UniParc:UPI0002107F67 | ArrayExpress:VIT_11s0016g04240 | EnsemblPlantsGene:VIT_11s0016g04240 | EnsemblPlants:VIT_11s0016g04240.t01 | RefSeq:XP_002281346 |
| RefSeq:XP_002281346.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:3533377..3539247
Molecular Weight (calculated)
80591.7 Da
IEP (calculated)
7.783
GRAVY (calculated)
-0.467
Length
721 amino acids
Sequence
(BLAST)
(BLAST)
001: MWVSGVQSLS SSVQSTPEKH GHSDDASRSL ELLQEFLKSG PKKELLRSCF TKEKKHSASS KCKMAEQVVK TSNKTFKNQD ARKVSSSPNN QSTSRKHHRK
101: GENPIRLPLA TEQSPDFVCS NSWVCKNSAC RAVLSIEDTF CKRCSCCICH RFDDNKDPSL WLVCTSESSH EDSCGLSCHI DCALLRNKVG VVDLGQLMQL
201: DGSYCCATCG KVSGILGCWK KQLLIAKDAR RVDILCHRIW LSYRLLDGTS RFKELHEIIR DAKAKLETEV GPVNGVSAKM ARGIVSRLSI AGDVQKLCSL
301: AIEKADEWLG SVSNKNPNSR EDSLPAACRF LFEEVTSSSI VIVLVELSVL SPDNIEGYKL WYCKSREETH QKEPICFIPK TQRRVLISNL QPCTEYSFRI
401: ISYTKSGDLG HSEAKCFTKS VEIIYKSSNS TIMQNGEKEN PPIEGNSSSA KREPKNTTAA ESSPDFKVRE LGKVLRMAWA QEKGSLDKFC RMDLEKCCGV
501: TKLVKPEKAE EHQLPLVSRE LDLNVVSVPD LNEVLTPPIE SFRDEDNVYS LARAVEADED DVSHDVVREK NCLARSHGSG DSQTWTRGLG GEVPDVDSRA
601: GLCRKRAAST NGEARDCDST LINGSPFRVA NGSGCLDENF EYCVKIIRWL ECEGHIKQEF RLKLLTWFSL RSTEQERRVV NTFIQTLIDD PSSLAGQLVD
701: SFSDIISNKR PRNGFCSKLW H
101: GENPIRLPLA TEQSPDFVCS NSWVCKNSAC RAVLSIEDTF CKRCSCCICH RFDDNKDPSL WLVCTSESSH EDSCGLSCHI DCALLRNKVG VVDLGQLMQL
201: DGSYCCATCG KVSGILGCWK KQLLIAKDAR RVDILCHRIW LSYRLLDGTS RFKELHEIIR DAKAKLETEV GPVNGVSAKM ARGIVSRLSI AGDVQKLCSL
301: AIEKADEWLG SVSNKNPNSR EDSLPAACRF LFEEVTSSSI VIVLVELSVL SPDNIEGYKL WYCKSREETH QKEPICFIPK TQRRVLISNL QPCTEYSFRI
401: ISYTKSGDLG HSEAKCFTKS VEIIYKSSNS TIMQNGEKEN PPIEGNSSSA KREPKNTTAA ESSPDFKVRE LGKVLRMAWA QEKGSLDKFC RMDLEKCCGV
501: TKLVKPEKAE EHQLPLVSRE LDLNVVSVPD LNEVLTPPIE SFRDEDNVYS LARAVEADED DVSHDVVREK NCLARSHGSG DSQTWTRGLG GEVPDVDSRA
601: GLCRKRAAST NGEARDCDST LINGSPFRVA NGSGCLDENF EYCVKIIRWL ECEGHIKQEF RLKLLTWFSL RSTEQERRVV NTFIQTLIDD PSSLAGQLVD
701: SFSDIISNKR PRNGFCSKLW H
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.