Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070566 | Potato | cytosol | 18.41 | 12.64 |
| AT2G18880.1 | Thale cress | nucleus | 24.69 | 11.15 |
| Zm00001d024824_P001 | Maize | cytosol | 21.34 | 10.83 |
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 20.92 | 10.42 |
| Solyc05g018390.2.1 | Tomato | nucleus | 28.03 | 10.36 |
| KRH39246 | Soybean | nucleus, plastid | 27.62 | 10.14 |
| AT4G30200.2 | Thale cress | nucleus | 29.71 | 9.94 |
| Os05t0145400-01 | Rice | cytosol | 25.1 | 9.88 |
| KXG21293 | Sorghum | cytosol | 24.69 | 9.88 |
| KRH41601 | Soybean | nucleus, plastid | 26.78 | 9.82 |
| AT3G24440.1 | Thale cress | nucleus | 24.27 | 9.63 |
| KRH60306 | Soybean | nucleus | 28.03 | 9.29 |
| TraesCS1B01G108200.1 | Wheat | cytosol | 23.43 | 9.11 |
| KRH48444 | Soybean | nucleus | 27.2 | 9.04 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 24.27 | 9.02 |
| TraesCS1D01G090400.1 | Wheat | cytosol | 23.01 | 8.94 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 22.59 | 8.94 |
| AT5G57380.1 | Thale cress | nucleus | 23.01 | 8.87 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 22.59 | 8.79 |
| Zm00001d023897_P003 | Maize | cytosol | 26.36 | 8.75 |
| EES17116 | Sorghum | nucleus | 25.52 | 8.74 |
| VIT_11s0016g04240.t01 | Wine grape | nucleus | 26.36 | 8.74 |
| Zm00001d041715_P003 | Maize | nucleus | 25.1 | 8.61 |
| Os12t0533500-01 | Rice | nucleus | 25.1 | 8.49 |
| TraesCS5D01G109600.1 | Wheat | nucleus | 24.69 | 8.46 |
| TraesCS5A01G097100.1 | Wheat | nucleus | 23.85 | 8.18 |
| TraesCS5B01G102800.1 | Wheat | nucleus | 23.85 | 8.18 |
| HORVU7Hr1G096840.1 | Barley | plastid | 23.85 | 7.5 |
| GSMUA_Achr10P... | Banana | mitochondrion | 5.44 | 6.16 |
| GSMUA_Achr10P... | Banana | extracellular | 4.18 | 4.2 |
Protein Annotations
| ArrayExpress:AT2G18870 | EnsemblPlants:AT2G18870.1 | EnsemblPlantsGene:AT2G18870 | EntrezGene:816402 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF24 | ProteinID:AEC06817.1 | RefSeq:AT2G18870 |
| RefSeq:AT2G18870-TAIR-G | RefSeq:NP_179477.2 | SEG:seg | Symbol:VEL3 | TAIR:AT2G18870 | TAIR:AT2G18870.1 |
| TMHMM:TMhelix | Unigene:At.52817 | UniParc:UPI0000196B9E | UniProt:F4IRH5 | MapMan:35.1 | : |
Description
VEL3Vernalization5/VIN3-like protein [Source:UniProtKB/TrEMBL;Acc:F4IRH5]
Coordinates
chr2:+:8167471..8168668
Molecular Weight (calculated)
26988.9 Da
IEP (calculated)
9.115
GRAVY (calculated)
-0.622
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSLDVFCQ KKKLLVGHFT ISYWWVILLH AGAASNSNLS DDKKKRRKNP KPRHLSSYGK RNNTPVQPSE TETKSQGKRV CFNNSDVRQM KQNTSSRENQ
101: FGIKETVLEN FPNVTPQFMS DQINGHQDKP EKAKKNPESY GLGLEQCVKI IRKLECSGYV ESTFRQKFLT WFSLRATSQE RNTVTTFMNA FNDDSMALAE
201: QLVDTFSDCI WSKGSVIGDR DGGGSSGVSL CCIFFLPDC
101: FGIKETVLEN FPNVTPQFMS DQINGHQDKP EKAKKNPESY GLGLEQCVKI IRKLECSGYV ESTFRQKFLT WFSLRATSQE RNTVTTFMNA FNDDSMALAE
201: QLVDTFSDCI WSKGSVIGDR DGGGSSGVSL CCIFFLPDC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.