Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21293 | Sorghum | cytosol | 76.01 | 59.97 |
| GSMUA_Achr10P... | Banana | mitochondrion | 24.63 | 54.98 |
| Os05t0145400-01 | Rice | cytosol | 59.24 | 45.96 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 56.26 | 43.87 |
| TraesCS1D01G090400.1 | Wheat | cytosol | 55.63 | 42.6 |
| TraesCS1B01G108200.1 | Wheat | cytosol | 54.99 | 42.11 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 54.56 | 41.86 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 47.56 | 34.84 |
| PGSC0003DMT400070566 | Potato | cytosol | 25.27 | 34.2 |
| Zm00001d041715_P003 | Maize | nucleus | 49.26 | 33.29 |
| Solyc05g018390.2.1 | Tomato | nucleus | 44.37 | 32.3 |
| KRH41601 | Soybean | nucleus, plastid | 44.59 | 32.21 |
| KRH39246 | Soybean | nucleus, plastid | 44.16 | 31.95 |
| Zm00001d023897_P003 | Maize | cytosol | 48.62 | 31.81 |
| CDX77426 | Canola | cytosol | 22.29 | 30.97 |
| Bra015040.1-P | Field mustard | cytosol | 21.44 | 29.79 |
| KRH48444 | Soybean | nucleus | 45.44 | 29.76 |
| KRH60306 | Soybean | nucleus | 43.95 | 28.71 |
| CDX77427 | Canola | nucleus | 35.67 | 28.24 |
| Bra015039.1-P | Field mustard | nucleus | 35.46 | 28.07 |
| CDY39555 | Canola | nucleus | 35.88 | 26.12 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 42.04 | 23.21 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 10.83 | 21.34 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 30.36 | 18.82 |
| Zm00001d024318_P009 | Maize | plasma membrane | 25.05 | 17.56 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 31.21 | 17.4 |
| Zm00001d049370_P002 | Maize | mitochondrion | 24.42 | 16.86 |
| GSMUA_Achr10P... | Banana | extracellular | 1.06 | 2.1 |
Protein Annotations
| EnsemblPlants:Zm00001d024824_P001 | EnsemblPlants:Zm00001d024824_T001 | EnsemblPlantsGene:Zm00001d024824 | Gene3D:2.60.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:FN3_dom | InterPro:FN3_sf | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF25 | PFAM:PF00041 | PFscan:PS50853 | ProteinID:AQK42116.1 | SUPFAM:SSF49265 |
| UniParc:UPI000842FC8F | UniProt:A0A1D6J244 | MapMan:35.1 | : | : | : |
Description
VIN3-like protein 1
Coordinates
chr10:-:89687263..89690813
Molecular Weight (calculated)
53039.6 Da
IEP (calculated)
7.587
GRAVY (calculated)
-0.496
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCGFYLYRD NSFQINRGYW KRQLVIGKDA RRVDNLCQRI YLSYRLLEGT VHFKELHEII EDAKAKLESE VGPLDGMSAK NAHGIVSRFS AGIAVQKLCS
101: TAIQRADEWL SSPDLHLRDS LPVACRFKFV DITSSSLIVI LKETSSSDTI KGYKLWYWKS REQPSMEKPV IVSKDERKIL LYDLTPCTEY SFRVISFTDD
201: GVLGHSESRC RTESREIFVM RAPKNAVGGG ATHAQKKDRN QSCKSTGFKI RDIWKNFQEA LDAEGCFEGF SEDVHEGSCS RSVTETELSG ACRKLHFNSS
301: SVPDLNAEVP VPVDYTENHY YSKKGLVRSN DSGDSETCAV GQTAEPPAVE SRQVSKVNSV PVNKCEQNGA SAICHEKMLS GSTRQLDGDY EHCVKVVRQL
401: ECDGHIENGF RMKFLTWYSL RSTDQERKAV STFVRTLSNE PSSLAEQLVD SFGEILNSKK AKTGFCSKLW H
101: TAIQRADEWL SSPDLHLRDS LPVACRFKFV DITSSSLIVI LKETSSSDTI KGYKLWYWKS REQPSMEKPV IVSKDERKIL LYDLTPCTEY SFRVISFTDD
201: GVLGHSESRC RTESREIFVM RAPKNAVGGG ATHAQKKDRN QSCKSTGFKI RDIWKNFQEA LDAEGCFEGF SEDVHEGSCS RSVTETELSG ACRKLHFNSS
301: SVPDLNAEVP VPVDYTENHY YSKKGLVRSN DSGDSETCAV GQTAEPPAVE SRQVSKVNSV PVNKCEQNGA SAICHEKMLS GSTRQLDGDY EHCVKVVRQL
401: ECDGHIENGF RMKFLTWYSL RSTDQERKAV STFVRTLSNE PSSLAEQLVD SFGEILNSKK AKTGFCSKLW H
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.