CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60306	Soybean	nucleus	84.66	76.56
KRH39246	Soybean	nucleus, plastid	75.61	75.73
KRH48444	Soybean	nucleus	74.54	67.59
Solyc05g018390.2.1	Tomato	nucleus	63.65	64.14
GSMUA_Achr10P...	Banana	mitochondrion	19.17	59.24
VIT_11s0016g04240.t01	Wine grape	nucleus	65.18	58.95
PGSC0003DMT400070566	Potato	cytosol	31.14	58.33
GSMUA_Achr4P01640_001	Banana	nucleus	55.98	56.77
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.42	50.83
Os05t0145400-01	Rice	cytosol	45.4	48.76
CDX77426	Canola	cytosol	25.15	48.38
Os12t0533500-01	Rice	nucleus	52.3	48.23
Bra015040.1-P	Field mustard	cytosol	25.0	48.08
TraesCS5D01G109600.1	Wheat	nucleus	50.46	47.2
TraesCS5A01G097100.1	Wheat	nucleus	50.15	46.92
TraesCS5B01G102800.1	Wheat	nucleus	50.15	46.92
TraesCS1B01G108200.1	Wheat	cytosol	43.25	45.85
TraesCS1D01G090400.1	Wheat	cytosol	43.1	45.69
HORVU1Hr1G019570.1	Barley	nucleus	42.94	45.6
TraesCS1A01G108900.1	Wheat	cytosol	42.18	45.53
Zm00001d041715_P003	Maize	nucleus	47.85	44.76
KXG21293	Sorghum	cytosol	40.95	44.72
Zm00001d024824_P001	Maize	cytosol	32.21	44.59
EES17116	Sorghum	nucleus	47.39	44.27
Bra015039.1-P	Field mustard	nucleus	39.72	43.53
Zm00001d023897_P003	Maize	cytosol	47.85	43.33
CDX77427	Canola	nucleus	39.42	43.19
HORVU7Hr1G096840.1	Barley	plastid	50.0	42.89
CDY39555	Canola	nucleus	39.26	39.57
GSMUA_Achr10P...	Banana	extracellular	12.88	35.29
KRH02856	Soybean	nucleus	36.04	31.89
KRH19033	Soybean	nucleus	35.43	31.39
KRH16856	Soybean	nucleus	26.69	27.75
AT2G18870.1	Thale cress	nucleus, plasma membrane	9.82	26.78
KRH72469	Soybean	nucleus	24.23	25.94

Protein Annotations

EntrezGene:100815645	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EMBL:ACUP02004772	InterPro:FN3_dom	InterPro:FN3_sf
EnsemblPlantsGene:GLYMA_08G039800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003961	InterPro:IPR013783
InterPro:Ig-like_fold	UniProt:K7L4U6	ProteinID:KRH41597.1	ProteinID:KRH41598.1	ProteinID:KRH41599.1	ProteinID:KRH41600.1
EnsemblPlants:KRH41601	ProteinID:KRH41601	ProteinID:KRH41601.1	ProteinID:KRH41602.1	ProteinID:KRH41603.1	ProteinID:KRH41604.1
ProteinID:KRH41605.1	ProteinID:KRH41606.1	ProteinID:KRH41607.1	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227
PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	SUPFAM:SSF49265	UniParc:UPI00023C6262	:

Description

hypothetical protein

Coordinates

chr8:+:3138149..3148036

Molecular Weight (calculated)

72467.9 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.428

Length

652 amino acids

Sequence
(BLAST)

001: MTENKSTSKI TKKQETKKVS SFSHQPPRKQ PRKGENPTRL IPPPDQSSDF GHSNTWICKN AACRAVLSMD DTFCRRCSCC ICHLFDDNKD PSLWLVCTSE
101: SAQGGDSCGL SCHIECALQH EKVGVIDHGQ LMQLDGGYCC ASCGKVTGIL GCWKKQLTIA KDARRVDVLC YRIYLSYRLL DGTSKFKDLH QTVQEAKAKL
201: ETEVGPVNGV SAKMARGIVS RLPIASGIQK LCSLAIEKAD RWLATVPYVN PDSTEGSLPA ACKFVFEEVT TSSAKIILIE MSNICSEEIK GYKLWYYKSQ
301: DESPTKDPIS MFPKSQRRIL VSNLKPCTEY TFRIISYTDT RDLGHSEAKC FTQSIEIVKN NPSSSVAMNK EKENLLTRGN SSVSKIGPNA TTEGYGFKVR
401: DLGKFLRLAW AQEQGYLEEF CCANVKNCCG QSEMVDKPRI PEAQLPSLSR VLDLNVVSVP DLNEELTPPF EYSRDEDNGC SLLQAVEADD DAASHDLEKN
501: GLVRSHGSGD SQTWTHGPTG EVSAVDSRID MCRKRIASTN EETHDCDSTL INGSPLRISD GSCSLDENFE YCVKVIRWLE CEAHIKQEFR LKLLTWFSLR
601: ATEQERRVVN TFIQTLIDDP SSLAGQLVDS FSDIISNKRL RSGFCSKAGA SN

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.