Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041715_P003 | Maize | nucleus | 86.11 | 88.95 |
| EES17116 | Sorghum | nucleus | 85.97 | 88.68 |
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.14 | 75.21 |
| TraesCS5A01G097100.1 | Wheat | nucleus | 68.47 | 70.73 |
| TraesCS5B01G102800.1 | Wheat | nucleus | 68.47 | 70.73 |
| TraesCS5D01G109600.1 | Wheat | nucleus | 68.33 | 70.59 |
| Os12t0533500-01 | Rice | nucleus | 68.61 | 69.87 |
| HORVU7Hr1G096840.1 | Barley | plastid | 68.61 | 65.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 18.61 | 63.51 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 50.14 | 56.14 |
| Solyc05g018390.2.1 | Tomato | nucleus | 45.14 | 50.23 |
| Zm00001d024824_P001 | Maize | cytosol | 31.81 | 48.62 |
| KRH41601 | Soybean | nucleus, plastid | 43.33 | 47.85 |
| KRH39246 | Soybean | nucleus, plastid | 42.78 | 47.31 |
| KRH48444 | Soybean | nucleus | 45.83 | 45.9 |
| KRH60306 | Soybean | nucleus | 45.83 | 45.77 |
| Bra015040.1-P | Field mustard | cytosol | 21.25 | 45.13 |
| CDX77426 | Canola | cytosol | 21.11 | 44.84 |
| PGSC0003DMT400070566 | Potato | cytosol | 21.67 | 44.83 |
| Bra015039.1-P | Field mustard | nucleus | 32.78 | 39.66 |
| CDX77427 | Canola | nucleus | 32.78 | 39.66 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 45.0 | 37.98 |
| CDY39555 | Canola | nucleus | 32.78 | 36.48 |
| GSMUA_Achr10P... | Banana | extracellular | 11.94 | 36.13 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 30.0 | 28.42 |
| Zm00001d024318_P009 | Maize | plasma membrane | 25.83 | 27.68 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.75 | 26.36 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 30.42 | 25.92 |
| Zm00001d049370_P002 | Maize | mitochondrion | 24.31 | 25.66 |
Protein Annotations
| EntrezGene:100280056 | MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | ProteinID:AQK40354.1 | EMBL:BT061768 | UniProt:C0HHG2 |
| InterPro:FN3_dom | InterPro:FN3_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR003961 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF17 | SUPFAM:SSF49265 | UniParc:UPI00019489C5 | EnsemblPlantsGene:Zm00001d023897 | EnsemblPlants:Zm00001d023897_P003 |
| EnsemblPlants:Zm00001d023897_T003 | SEG:seg | : | : | : | : |
Description
VIN3-like protein 1
Coordinates
chr10:+:26984101..26996894
Molecular Weight (calculated)
79060.4 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.407
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASGGDAPE LAGVPPCPIS SARMALSGDL FRSAVITNAC NAASAPEENR LADDSNTISE NAQESLSSLP EQESNDASVN TEKKEPGISK CKSVDEIPKT
101: VAVKRCKNID SKKVSSNNNN NPSFTGSLVL KKQPAKGGHL FQLCENGMSQ DTKTPSTRIC INSACKAVFN SDNAFCKRCS CCICHGFDDN KDPSLWLVCS
201: SEIGDQDCCG SSCHIECALK HRKTGCIELG QSIQLDGNYC CAACGKVIGI LGFWKRQLVV AKDARRVDNL CSRIYLSHRL LDGTTRFKEL HRIVEDAKAK
301: LESEVGPLDG TSSKMARGIV GRLHVAADVQ KLCTLAIEKA NEWLSSNIQS ETKQNDTLPS ACRFKFEDIT ASSLVLVLKE AVSSQYHAIK GYKLWYWNSR
401: EAPFTGEPAV FPKDQRRILI SNLQPCTEYS FRIISFTEDG ELGHSESKVF TKSVEIIRKN TELGAEGCSS SAKGAGKRQN VRSLGFQVRQ LGNVFRKAQT
501: EENGYPSALC KDEIEDSCDQ SDSVIPVKDQ IPRGASRKLD LNETSVPDLN AEVVMPTECC QNDNGCSSGK NAFTKSNGCG DSETCAEGHV GDAPAMESLS
601: QSRKQASDLE QETCVDDSNL VARAVRLFAP KLGQLDDNYE YCVKIIRWLE CSGLIEKDFR MKFLTWFSLR STEQERRVVI TFIRTLIDEP SSLAAQLLDS
701: FEEIVTSKRL RTGFCTKLWH
101: VAVKRCKNID SKKVSSNNNN NPSFTGSLVL KKQPAKGGHL FQLCENGMSQ DTKTPSTRIC INSACKAVFN SDNAFCKRCS CCICHGFDDN KDPSLWLVCS
201: SEIGDQDCCG SSCHIECALK HRKTGCIELG QSIQLDGNYC CAACGKVIGI LGFWKRQLVV AKDARRVDNL CSRIYLSHRL LDGTTRFKEL HRIVEDAKAK
301: LESEVGPLDG TSSKMARGIV GRLHVAADVQ KLCTLAIEKA NEWLSSNIQS ETKQNDTLPS ACRFKFEDIT ASSLVLVLKE AVSSQYHAIK GYKLWYWNSR
401: EAPFTGEPAV FPKDQRRILI SNLQPCTEYS FRIISFTEDG ELGHSESKVF TKSVEIIRKN TELGAEGCSS SAKGAGKRQN VRSLGFQVRQ LGNVFRKAQT
501: EENGYPSALC KDEIEDSCDQ SDSVIPVKDQ IPRGASRKLD LNETSVPDLN AEVVMPTECC QNDNGCSSGK NAFTKSNGCG DSETCAEGHV GDAPAMESLS
601: QSRKQASDLE QETCVDDSNL VARAVRLFAP KLGQLDDNYE YCVKIIRWLE CSGLIEKDFR MKFLTWFSLR STEQERRVVI TFIRTLIDEP SSLAAQLLDS
701: FEEIVTSKRL RTGFCTKLWH
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.