Factsheet for TraesCS5D01G109600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G097100.1	Wheat	nucleus	97.85	97.85
TraesCS5B01G102800.1	Wheat	nucleus	97.13	97.13
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.84	89.79
HORVU7Hr1G096840.1	Barley	plastid	93.83	86.05
Os12t0533500-01	Rice	nucleus	76.04	74.96
Zm00001d041715_P003	Maize	nucleus	72.74	72.74
EES17116	Sorghum	nucleus	72.02	71.92
Zm00001d023897_P003	Maize	cytosol	70.59	68.33
GSMUA_Achr10P...	Banana	mitochondrion	18.79	62.09
GSMUA_Achr4P01640_001	Banana	nucleus	55.38	60.03
KRH41601	Soybean	nucleus, plastid	47.2	50.46
Solyc05g018390.2.1	Tomato	nucleus	46.77	50.39
KRH39246	Soybean	nucleus, plastid	46.63	49.92
TraesCS1D01G090400.1	Wheat	cytosol	43.04	48.78
KRH60306	Soybean	nucleus	49.5	47.85
KRH48444	Soybean	nucleus	48.21	46.73
CDX77426	Canola	cytosol	21.95	45.13
PGSC0003DMT400070566	Potato	cytosol	22.53	45.11
Bra015040.1-P	Field mustard	cytosol	21.81	44.84
GSMUA_Achr10P...	Banana	extracellular	14.49	42.44
CDX77427	Canola	nucleus	34.0	39.83
Bra015039.1-P	Field mustard	nucleus	33.43	39.16
VIT_04s0008g04380.t01	Wine grape	cytosol	47.06	38.45
CDY39555	Canola	nucleus	34.0	36.63
TraesCS6D01G113600.1	Wheat	nucleus	27.69	25.73
AT2G18870.1	Thale cress	nucleus, plasma membrane	8.46	24.69
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	28.84	24.51

Protein Annotations

EnsemblPlants:TraesCS5D01G109600.1	EnsemblPlantsGene:TraesCS5D01G109600	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853	SEG:seg
SUPFAM:SSF49265	TIGR:cd00063	MapMan:12.3.3.1.2.2	:	:	:

Description

No Description!

Coordinates

chr5D:+:123881657..123885324

Molecular Weight (calculated)

78162.4 Da

IEP (calculated)

6.755

GRAVY (calculated)

-0.541

Length

697 amino acids

Sequence
(BLAST)

001: MESTGGDPSG FAAEALHASS DVSEHEEIKP ADDSNTISDY AQEPLNFFLE QESNDASVST EKKESVVSKC KSVEEIPREA TVKRCKNIDS KKLFSNNKNS
101: PSLTGIQALR KPPRKGAHPI QLRESKMFQD KKPPSTWICK NAACKAVLTS ENTFCKRCSC CICHLFDDNK DPSLWLVCSS ETGDTDCCES SCHVECALQR
201: QKAGRIDLGQ SMHLDGNYCC AACGKVIGIL GFWKRQLAVA KDARRVDILC SRIYLSHRLL DGTTRFKELH QIVQDAKAKL ETEVGPLDGS SKMARCIVGR
301: LPVAADVQKL CSLAMEKADD WLQSNSQAET KQIDTLPTAC RFRFEDITAS SLVIVLKETA SSQYHAINGY KLWYWNSREP PSTGEPVIFP KDQRRILISN
401: LQPCTEYAFR IISFVEDGEL GHSESKCFTR SVEIMHKNIE HGAEGCSSTA KRNVKRQNGR SSGFKVRQLG KVLRRAWEED GFPSEFCKDE IEDSCDQSDS
501: VILEKGQVAH VVSRKLDLNE TSVPDLNAEV VMPTECLRNE NGYSSGKNDL RKSNGCGDFA TCTEGHVGEA PAMESRSQSR KQTSDLEQET CGEDGKLVIG
601: SQRHFSHRLG ELDNNYEYCV KIIRWLECCG HIEKEFRMRF LTWFSLRSTE QERRVVLTFI RTLVDEPGSL AGQLLDSFEE IVASKRPRTG FCTKLWH

Best Arabidopsis Sequence Match ( AT3G24440.2 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.