Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47942 | Canola | nucleus | 96.96 | 96.27 |
| Bra006824.1-P | Field mustard | nucleus | 59.75 | 68.44 |
| AT5G57380.1 | Thale cress | nucleus | 67.62 | 60.97 |
| Bra024456.1-P | Field mustard | nucleus | 31.48 | 40.84 |
| Bra010297.1-P | Field mustard | nucleus | 42.58 | 37.19 |
| Bra024097.1-P | Field mustard | cytosol | 41.68 | 36.46 |
| Bra011173.1-P | Field mustard | nucleus | 41.5 | 36.25 |
| KRH02856 | Soybean | nucleus | 45.08 | 34.19 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 45.08 | 34.15 |
| KRH19033 | Soybean | nucleus | 44.54 | 33.83 |
| Solyc07g018270.2.1 | Tomato | cytosol | 42.22 | 31.93 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 35.96 | 30.59 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 34.7 | 30.31 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 34.88 | 29.37 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 30.05 | 29.12 |
| Bra015040.1-P | Field mustard | cytosol | 16.46 | 27.14 |
| Os02t0152500-01 | Rice | nucleus | 35.06 | 26.17 |
| KXG29488 | Sorghum | nucleus | 35.42 | 26.02 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 34.88 | 25.66 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 32.38 | 24.1 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 31.84 | 23.73 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 31.84 | 23.73 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 31.84 | 23.73 |
| Bra015039.1-P | Field mustard | nucleus | 25.22 | 23.7 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 33.45 | 23.09 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 34.88 | 23.08 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 33.81 | 23.05 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 33.09 | 22.62 |
| PGSC0003DMT400019884 | Potato | cytosol | 13.77 | 20.87 |
Protein Annotations
| EnsemblPlants:Bra020445.1 | EnsemblPlants:Bra020445.1-P | EnsemblPlantsGene:Bra020445 | InterPro:Oberon_PHD | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 |
| PFAM:PF07227 | SEG:seg | UniParc:UPI0002545EF3 | UniProt:M4DVA1 | MapMan:12.3.3.1.2.2 | : |
Description
AT5G57380 (E=9e-152) VIN3 | VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding
Coordinates
chrA02:+:6820613..6823163
Molecular Weight (calculated)
62431.4 Da
IEP (calculated)
6.406
GRAVY (calculated)
-0.519
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAASLSKNW RFDSTVGPED IDPSSFQGVT CADFPKKKGL SVSERRELIH ALSKQPEEAS ELLNSWSRDE IMKIICAEMG KERKYTGLAK PKLIETLLKL
101: VSRPLGETSR PDRKNSKKKR KTTSYIICCE NVACRAALGT EDTFCRKCSC CVCQNYDEDK DPSLWITCEA CGVSCHLECA LEQERYGIGC DDDEVGRALD
201: GRFYCVFCGK DNDLLGCWRQ QVKVAKETQR VDVLCYRVSL GQKLLRGTRK YRYLLELMDE AVKKLEGDVG PLSGCAMKMA RGIVQSLSSG TQVQKLCSLA
301: MEALDKMVSP PSESVSGQGD KLSVRVEEVQ ARSVTVILDS EEPSSSQNQT TGVEGDEDEA GNMQSLLINS SSGLCSNPSL PEDEFNNALI RCCKENGDND
401: NIEVESELED ERLIKRKVNE PEGRELLVVT PCRRDAYKGK QEGNKRSKSR TATVNEKPET NVANGFGGDN DLVHVVKTIR CLEQEGHIDK SFRKRFLTWY
501: SLRATHREVR VVKLFIETFM DDLPSLGQQL MHTFSDCTLN KRSSASGVVP AGICLKLWH
101: VSRPLGETSR PDRKNSKKKR KTTSYIICCE NVACRAALGT EDTFCRKCSC CVCQNYDEDK DPSLWITCEA CGVSCHLECA LEQERYGIGC DDDEVGRALD
201: GRFYCVFCGK DNDLLGCWRQ QVKVAKETQR VDVLCYRVSL GQKLLRGTRK YRYLLELMDE AVKKLEGDVG PLSGCAMKMA RGIVQSLSSG TQVQKLCSLA
301: MEALDKMVSP PSESVSGQGD KLSVRVEEVQ ARSVTVILDS EEPSSSQNQT TGVEGDEDEA GNMQSLLINS SSGLCSNPSL PEDEFNNALI RCCKENGDND
401: NIEVESELED ERLIKRKVNE PEGRELLVVT PCRRDAYKGK QEGNKRSKSR TATVNEKPET NVANGFGGDN DLVHVVKTIR CLEQEGHIDK SFRKRFLTWY
501: SLRATHREVR VVKLFIETFM DDLPSLGQQL MHTFSDCTLN KRSSASGVVP AGICLKLWH
001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
Arabidopsis Description
VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.