Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 98.84 | 98.84 |
| Os03t0640100-01 | Rice | cytosol | 93.74 | 94.39 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 25.52 | 94.02 |
| Zm00001d013702_P001 | Maize | nucleus | 90.49 | 90.49 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 85.85 | 87.47 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 85.61 | 87.03 |
| KRH42369 | Soybean | nucleus | 85.38 | 86.59 |
| PGSC0003DMT400061016 | Potato | cytosol | 84.92 | 86.32 |
| KRH58491 | Soybean | nucleus | 84.92 | 86.12 |
| AT5G58230.1 | Thale cress | nucleus | 84.45 | 85.85 |
| Solyc01g104510.2.1 | Tomato | nucleus | 84.45 | 85.85 |
| CDY43875 | Canola | nucleus | 77.73 | 78.64 |
| CDY02805 | Canola | nucleus | 76.1 | 78.28 |
| Bra002667.1-P | Field mustard | nucleus | 76.33 | 77.23 |
| CDY62688 | Canola | nucleus | 76.33 | 77.23 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 73.55 | 75.48 |
| Bra020379.1-P | Field mustard | cytosol | 71.93 | 74.52 |
| CDY32715 | Canola | nucleus | 71.93 | 74.52 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 97.22 | 68.91 |
| CDY58569 | Canola | cytosol | 82.6 | 55.97 |
| CDX88663 | Canola | nucleus | 82.6 | 55.97 |
| Zm00001d022614_P001 | Maize | cytosol | 48.96 | 52.36 |
| Zm00001d043683_P001 | Maize | cytosol | 12.53 | 26.21 |
| Zm00001d011705_P002 | Maize | cytosol | 30.86 | 25.58 |
| Zm00001d043682_P002 | Maize | cytosol, plastid | 30.39 | 24.76 |
| Zm00001d053451_P001 | Maize | cytosol, nucleus, plastid | 12.99 | 24.35 |
| Zm00001d016170_P001 | Maize | cytosol | 17.87 | 24.14 |
| Zm00001d010850_P003 | Maize | plasma membrane | 24.36 | 21.83 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.67 | 21.34 |
| Zm00001d052871_P001 | Maize | cytosol | 1.39 | 20.0 |
| Zm00001d050047_P001 | Maize | nucleus | 10.9 | 17.03 |
Protein Annotations
| EntrezGene:103643702 | MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | UniProt:A0A1D6KX72 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | ProteinID:ONM07058.1 |
| ProteinID:ONM07059.1 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000220A712 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d033247 |
| EnsemblPlants:Zm00001d033247_P001 | EnsemblPlants:Zm00001d033247_T001 | SEG:seg | : | : | : |
Description
nucleosome/chromatin assembly factor C
Coordinates
chr1:+:255988480..256003180
Molecular Weight (calculated)
48665.8 Da
IEP (calculated)
4.639
GRAVY (calculated)
-0.486
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKAVGGAAD EEEFRAEVEE RLINEEYKIW KKNTPFLYDL VITHALEWPS LTVQWLPDRT EPPGKDHSVQ KMILGTHTSD NEPNYLMLAQ VQLPLDDAEA
101: DARHYDDDHA DIGGFGAASG KVQIVQQINH DGEVNRARYM PQNSFVIATK TVSAEVYVFD YSKHPSKPPL DGACNPDLRL KGHNSEGYGL SWSIFKEGHL
201: LSGSDDAQIC LWDIKANSRN KSLDALQIFK HHDGVVEDVA WHLRHEYLFG SVGDDYHLLI WDLRSPAPTK PVQSVVAHQG EVNCLAFHPF NEWVVATGST
301: DKTVKLFDLR KIDTSLHTFD CHKEEVFQVG WSPKNETILA SCCLGRRLMV WDLSRIGQEQ TPEDAEDGPP ELMFIHGGHT SKISDFSWNP CEDWVVASVA
401: EDNILQIWQM AENIYHDEDD LPISDEPAKT S
101: DARHYDDDHA DIGGFGAASG KVQIVQQINH DGEVNRARYM PQNSFVIATK TVSAEVYVFD YSKHPSKPPL DGACNPDLRL KGHNSEGYGL SWSIFKEGHL
201: LSGSDDAQIC LWDIKANSRN KSLDALQIFK HHDGVVEDVA WHLRHEYLFG SVGDDYHLLI WDLRSPAPTK PVQSVVAHQG EVNCLAFHPF NEWVVATGST
301: DKTVKLFDLR KIDTSLHTFD CHKEEVFQVG WSPKNETILA SCCLGRRLMV WDLSRIGQEQ TPEDAEDGPP ELMFIHGGHT SKISDFSWNP CEDWVVASVA
401: EDNILQIWQM AENIYHDEDD LPISDEPAKT S
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.