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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000196.1-P
Bra001094.1-P
Bra001773.1-P
Bra003237.1-P
Bra005553.1-P
Bra006051.1-P
Bra006276.1-P
Bra007238.1-P
Bra009055.1-P
Bra010348.1-P
Bra010412.1-P
Bra011075.1-P
Bra012564.1-P
Bra012916.1-P
Bra013364.1-P
Bra014697.1-P
Bra015039.1-P
Bra015040.1-P
Bra015200.1-P
Bra015397.1-P
Bra016979.1-P
Bra017569.1-P
Bra019070.1-P
Bra021078.1-P
Bra022023.1-P
Bra022541.1-P
Bra022771.1-P
Bra023501.1-P
Bra023933.1-P
Bra024171.1-P
Bra025031.1-P
Bra026380.1-P
Bra027857.1-P
Bra028599.1-P
Bra029984.1-P
Bra031959.1-P
Bra032481.1-P
Bra032592.1-P
Bra033334.1-P
Bra035439.1-P
Bra035820.1-P
Bra036038.1-P
Bra036300.1-P
Bra036422.1-P
Bra038252.1-P
Bra040097.1-P
Bra040131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58230.1 Bra032592.1-P AT1G02580.1 12970192
AT5G58230.1 Bra033334.1-P AT1G02580.1 12970192
AT5G58230.1 Bra015397.1-P AT1G05190.1 23778966
AT5G58230.1 Bra032481.1-P AT1G05190.1 23778966
AT5G58230.1 Bra005553.1-P AT2G32840.1 23778966
AT5G58230.1 Bra000196.1-P AT2G40630.1 23778966
AT5G58230.1 Bra016979.1-P AT2G40630.1 23778966
AT5G58230.1 Bra027857.1-P AT2G41840.1 23778966
AT5G58230.1 Bra035439.1-P AT2G41840.1 23778966
AT5G58230.1 Bra001094.1-P AT3G03960.1 23778966
AT5G58230.1 Bra031959.1-P AT3G03960.1 23778966
AT5G58230.1 Bra036422.1-P AT3G03960.1 23778966
AT5G58230.1 Bra001773.1-P AT3G20050.1 23778966
AT5G58230.1 Bra035820.1-P AT3G20050.1 23778966
AT5G58230.1 Bra038252.1-P AT3G20050.1 23778966
AT5G58230.1 Bra023933.1-P AT3G20740.1 12970192
AT5G58230.1 Bra023933.1-P AT3G20740.1 18812497
AT5G58230.1 Bra023933.1-P AT3G20740.1 23778966
AT5G58230.1 Bra015039.1-P AT3G24440.1 23778966
AT5G58230.1 Bra015040.1-P AT3G24440.1 23778966
AT5G58230.1 Bra012916.1-P AT3G49910.1 23778966
AT5G58230.1 Bra029984.1-P AT3G49910.1 23778966
AT5G58230.1 Bra036038.1-P AT3G49910.1 23778966
AT5G58230.1 Bra003237.1-P AT3G56340.1 23778966
AT5G58230.1 Bra007238.1-P AT3G56340.1 23778966
AT5G58230.1 Bra014697.1-P AT3G56340.1 23778966
AT5G58230.1 Bra036300.1-P AT4G02020.1 23778966
AT5G58230.1 Bra021078.1-P AT4G16845.1 23778966
AT5G58230.1 Bra040097.1-P AT4G16845.1 23778966
AT5G58230.1 Bra012564.1-P AT4G18960.1 23778966
AT5G58230.1 Bra013364.1-P AT4G18960.1 23778966
AT5G58230.1 Bra010412.1-P AT4G27090.1 23778966
AT5G58230.1 Bra019070.1-P AT4G27090.1 23778966
AT5G58230.1 Bra026380.1-P AT4G27090.1 23778966
AT5G58230.1 Bra010348.1-P AT4G29000.1 23778966
AT5G58230.1 Bra011075.1-P AT4G29000.1 23778966
AT5G58230.1 Bra024171.1-P AT4G29000.1 23778966
AT5G58230.1 Bra040131.1-P AT4G38130.1 23778966
AT5G58230.1 Bra006051.1-P AT5G10140.1 23778966
AT5G58230.1 Bra009055.1-P AT5G10140.1 23778966
AT5G58230.1 Bra022771.1-P AT5G10140.1 23778966
AT5G58230.1 Bra028599.1-P AT5G10140.1 23778966
AT5G58230.1 Bra006276.1-P AT5G15020.1 23778966
AT5G58230.1 Bra023501.1-P AT5G15020.1 23778966
AT5G58230.1 Bra017569.1-P AT5G46210.1 21240189
AT5G58230.1 Bra022023.1-P AT5G46210.1 21240189
AT5G58230.1 Bra025031.1-P AT5G46210.1 21240189
AT5G58230.1 Bra015200.1-P AT5G51230.1 23778966
AT5G58230.1 Bra022541.1-P AT5G51230.1 23778966
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62688 Canola nucleus 99.3 99.3
AT5G58230.1 Thale cress nucleus 84.04 84.43
VIT_16s0013g01550.t01 Wine grape nucleus 80.75 81.13
PGSC0003DMT400061016 Potato cytosol 79.58 79.95
Solyc01g104510.2.1 Tomato nucleus 79.11 79.48
GSMUA_Achr4P31680_001 Banana nucleus 78.17 78.72
KRH42369 Soybean nucleus 78.4 78.59
KRH58491 Soybean nucleus 77.93 78.12
Zm00001d033252_P001 Maize cytosol, nucleus, plastid 21.36 77.78
TraesCS5D01G385600.1 Wheat nucleus 77.23 76.87
Os03t0640100-01 Rice cytosol 77.0 76.64
TraesCS5B01G378700.1 Wheat nucleus 77.0 76.64
TraesCSU01G072700.1 Wheat nucleus 76.76 76.4
Zm00001d033248_P002 Maize cytoskeleton, cytosol, nucleus 77.23 76.33
Zm00001d033247_P001 Maize nucleus 77.23 76.33
Bra020379.1-P Field mustard cytosol 73.94 75.72
TraesCS5D01G385800.1 Wheat cytosol 39.2 74.89
Zm00001d013702_P001 Maize nucleus 74.65 73.78
GSMUA_Achr5P02390_001 Banana cytosol 67.14 68.1
OQU91278 Sorghum cytosol, nucleus, plastid 77.23 54.11
Bra037289.1-P Field mustard cytosol 52.11 53.75
Bra001997.1-P Field mustard nucleus 51.88 52.87
Bra011133.1-P Field mustard nucleus 31.69 28.36
Bra031085.1-P Field mustard nucleus 33.33 28.17
Bra040678.1-P Field mustard nucleus 32.39 27.77
Bra036717.1-P Field mustard nucleus 30.28 26.88
Bra040681.1-P Field mustard cytosol 18.31 21.55
Bra032295.1-P Field mustard cytosol 15.73 21.14
Bra010844.1-P Field mustard cytosol 15.49 20.82
Bra031087.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 12.68 19.93
Protein Annotations
MapMan:12.2.1.3MapMan:12.3.3.1.1.1Gene3D:2.130.10.10EnsemblPlantsGene:Bra002667EnsemblPlants:Bra002667.1EnsemblPlants:Bra002667.1-P
InterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634InterPro:Histone-bd_RBBP4_NInterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
UniProt:M4CEN6PFAM:PF00400PFAM:PF12265PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082
PFscan:PS50294PANTHER:PTHR22850PANTHER:PTHR22850:SF82SMART:SM00320SUPFAM:SSF50978UniParc:UPI000254533F
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sf:
Description
AT5G58230 (E=6e-225) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding
Coordinates
chrA10:+:8332696..8334469
Molecular Weight (calculated)
47874.6 Da
IEP (calculated)
4.321
GRAVY (calculated)
-0.481
Length
426 amino acids
Sequence
(BLAST)
001: MAKDDVEMRG EAEERIINED YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PSRDEPPGQN YSVQKMLLGT HTSDNEPNYL MIAQVQLPLE DTESEARQYD
101: DDRSEFGGFG CASGKVQVIQ QIVHEGEVNR ARYMPQNPFL IATKTVSAEV FLFDYSKHPS KPALDGACNP DMKLKGHSSE GYGLSWSTLK EGHLLSGADD
201: AQICLWDVSA TPQSNVLDAQ QIFKAHEGVV EDVAWHMQHA HLFGSVGDDQ YLHIWDLRSP SPSGPVKSVE AHSMEVNCLA FNPVNEWIVA TGSTDKTVKL
301: FDLRMLNSAL HTFESHKEEV FQVGWNPNNE TILASCCLGR RLIVWDVSRI NDEQTAEDAE DGPPELLFIH GGHTSKVSDF SWNPCEDWII SSVSEDNILQ
401: IWQMAENIYH DEDDGPGTVE EPTNGS
Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.