Factsheet for Bra040681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	60.22	80.44
Os12t0132400-01	Rice	nucleus	29.28	69.28
CDY35872	Canola	cytosol, nucleus, plastid	63.54	67.65
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	83.7	64.61
VIT_11s0016g02270.t01	Wine grape	nucleus	72.93	55.7
KRH58776	Soybean	nucleus	71.82	54.97
KRH42676	Soybean	nucleus	71.27	52.23
Solyc07g039200.2.1	Tomato	nucleus	66.57	52.16
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	67.13	51.92
PGSC0003DMT400034220	Potato	nucleus	67.13	51.81
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	41.71	49.51
Os11t0134500-01	Rice	nucleus	63.26	49.25
TraesCS4B01G131200.1	Wheat	nucleus	64.64	48.55
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.36	48.34
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	64.09	48.13
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.09	48.13
Solyc05g014090.1.1	Tomato	mitochondrion	51.93	47.36
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	60.77	46.03
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	60.77	45.93
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.5	45.34
Zm00001d010850_P003	Maize	plasma membrane	60.22	45.32
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	59.94	44.93
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	57.18	44.71
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	46.41	44.33
OQU82815	Sorghum	mitochondrion	54.42	42.92
Bra002667.1-P	Field mustard	nucleus	21.55	18.31
Bra037289.1-P	Field mustard	cytosol	19.89	17.43
Bra020379.1-P	Field mustard	cytosol	19.89	17.31
Bra001997.1-P	Field mustard	nucleus	19.61	16.99
Bra011133.1-P	Field mustard	nucleus	21.82	16.6
Bra040678.1-P	Field mustard	nucleus	21.55	15.69
Bra031085.1-P	Field mustard	nucleus	21.82	15.67
Bra010844.1-P	Field mustard	cytosol	12.98	14.83
Bra032295.1-P	Field mustard	cytosol	12.43	14.2
Bra036717.1-P	Field mustard	nucleus	18.78	14.17
Os12t0132300-02	Rice	cytosol	1.1	2.19
Os11t0134400-00	Rice	cytosol	1.1	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EnsemblPlantsGene:Bra040681	EnsemblPlants:Bra040681.1	EnsemblPlants:Bra040681.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FHV2
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000253E76E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT2G19540 (E=1e-087) | transducin family protein / WD-40 repeat family protein

Coordinates

chrScaffold000232:+:54864..56925

Molecular Weight (calculated)

39724.5 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.396

Length

362 amino acids

Sequence
(BLAST)

001: MPIRVWQPGV DKLEEGEELQ CDPSAYNSLH GFHVVLTFLG DKLGLSRTEF PHTLYMVAGT QAEKAPWNSI GLFKISSLSG KRRDVVPKNL VNGDDGMEDE
101: DDEGEDSDSD EESEDGASSA PNIQVRRVAH HGCVNRIRAM PQNPHICVSS ADSAHVQPAS GSWTVDPIPL AGHTASEANV FASCSVDGIV ALWDIRMGKS
201: PGLSFMAHNE DVNVISWNRL ASCMLASGSD DGTFSIHDLR VIKDKDKAKV AHFGYHKHPI TSIEWSAHES STLAVSSGDN QLTIWDLSLK MDEEEFKAQS
301: KEQVNTPQDL PPQLLFVHQG QKDLKELHWH NQIPGMIVST AADGFNILMP YKIQNTLPDL AA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.