Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G139800.1 | Wheat | mitochondrion, plastid | 96.27 | 96.27 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 76.19 | 76.83 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 75.78 | 76.57 |
| TraesCS4B01G131200.1 | Wheat | nucleus | 76.19 | 76.35 |
| Zm00001d010850_P003 | Maize | plasma membrane | 75.57 | 75.88 |
| OQU82815 | Sorghum | mitochondrion | 66.46 | 69.93 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 67.08 | 69.23 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 65.22 | 66.46 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 41.41 | 65.57 |
| PGSC0003DMT400034220 | Potato | nucleus | 63.15 | 65.03 |
| Solyc07g039200.2.1 | Tomato | nucleus | 62.11 | 64.94 |
| KRH58776 | Soybean | nucleus | 63.35 | 64.69 |
| KRH42676 | Soybean | nucleus | 63.35 | 61.94 |
| CDY48712 | Canola | plastid | 60.25 | 61.78 |
| CDY03357 | Canola | plastid | 60.46 | 61.73 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 59.01 | 60.77 |
| CDY21659 | Canola | nucleus | 59.42 | 60.68 |
| Bra040681.1-P | Field mustard | cytosol | 45.34 | 60.5 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 49.48 | 60.2 |
| CDX81935 | Canola | nucleus | 59.01 | 60.0 |
| Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 33.33 | 59.41 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 45.96 | 58.58 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 55.9 | 58.32 |
| CDX82701 | Canola | nucleus | 46.79 | 58.25 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 39.54 | 56.18 |
| TraesCS5B01G332200.1 | Wheat | cytosol | 21.33 | 25.25 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 21.53 | 24.3 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 21.53 | 22.08 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Histone-bd_RBBP4_N |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5B01G137200 |
| EnsemblPlants:TraesCS5B01G137200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:256942932..256952222
Molecular Weight (calculated)
53411.0 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.482
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTIKKSRS KRTKGSRKGE ASSWSSTNHA VASGPAQVWQ PGVDALEEGE ELQFDPEAYN YLRGFSIGWP CLSFDVLRDQ LGLVRSEFPH TLYGIAGTQS
101: EKASWNYAGI FKLSNIKGKK REPIPSSAFD GDDDMDSDSS SDEDDEEINE DTEPILHLQK VAHEGSINRI RSMNQKPEIC ATWGDTGHVQ VWDFSSFIAS
201: LEDPGTVTHK DNDIIHNHAP LKVFSGHKDE GYAIDWSPNV TGRLVSGDCN KCIHLWEPTS SDWNVDTKPF VGHSASVEDL QWNPTEENMF ASCSVDGTIA
301: IWDIRIGRKP CYAPVRVHNS DVNVISWNSL AGCLIASGFD DGSISVHDIR AIESGEPGKS LVAHFAYHKH PITSVEWSPY EASTLAVSSA DNQLTIWDLS
401: LERDAEEEAE FKSKMKEQAN APQDLPPQLL FVHQGQKDLK ELHWHPQIPG MIISTAADGF NVLMPSNIDA TIPLAGASIP MRM
101: EKASWNYAGI FKLSNIKGKK REPIPSSAFD GDDDMDSDSS SDEDDEEINE DTEPILHLQK VAHEGSINRI RSMNQKPEIC ATWGDTGHVQ VWDFSSFIAS
201: LEDPGTVTHK DNDIIHNHAP LKVFSGHKDE GYAIDWSPNV TGRLVSGDCN KCIHLWEPTS SDWNVDTKPF VGHSASVEDL QWNPTEENMF ASCSVDGTIA
301: IWDIRIGRKP CYAPVRVHNS DVNVISWNSL AGCLIASGFD DGSISVHDIR AIESGEPGKS LVAHFAYHKH PITSVEWSPY EASTLAVSSA DNQLTIWDLS
401: LERDAEEEAE FKSKMKEQAN APQDLPPQLL FVHQGQKDLK ELHWHPQIPG MIISTAADGF NVLMPSNIDA TIPLAGASIP MRM
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.