Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 98.96 | 98.96 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 98.76 | 98.76 |
| HORVU4Hr1G026330.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 95.44 | 95.44 |
| Os12t0132400-01 | Rice | nucleus | 28.01 | 88.24 |
| Os11t0134500-01 | Rice | nucleus | 80.29 | 83.23 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 82.16 | 82.67 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 81.12 | 81.8 |
| Zm00001d010850_P003 | Maize | plasma membrane | 81.12 | 81.29 |
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 76.35 | 76.19 |
| OQU82815 | Sorghum | mitochondrion | 72.41 | 76.03 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 71.58 | 73.72 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 69.71 | 70.89 |
| KRH58776 | Soybean | nucleus | 67.43 | 68.71 |
| PGSC0003DMT400034220 | Potato | nucleus | 65.98 | 67.8 |
| Solyc07g039200.2.1 | Tomato | nucleus | 64.73 | 67.53 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 41.91 | 66.23 |
| Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 36.93 | 65.68 |
| CDY48712 | Canola | plastid | 63.9 | 65.39 |
| KRH42676 | Soybean | nucleus | 67.01 | 65.38 |
| CDY03357 | Canola | plastid | 64.11 | 65.33 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 63.07 | 64.82 |
| Bra040681.1-P | Field mustard | cytosol | 48.55 | 64.64 |
| CDY21659 | Canola | nucleus | 63.28 | 64.48 |
| CDX81935 | Canola | nucleus | 63.07 | 64.0 |
| CDX82701 | Canola | nucleus | 50.62 | 62.89 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 50.83 | 61.71 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 47.3 | 60.16 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 42.32 | 60.0 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 57.26 | 59.61 |
| TraesCS5B01G332200.1 | Wheat | cytosol | 21.78 | 25.74 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 22.2 | 25.0 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 22.82 | 23.35 |
| Os12t0132300-02 | Rice | cytosol | 1.24 | 3.28 |
| Os11t0134400-00 | Rice | cytosol | 1.24 | 3.28 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Histone-bd_RBBP4_N |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS4B01G131200 |
| EnsemblPlants:TraesCS4B01G131200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr4B:-:171616793..171621029
Molecular Weight (calculated)
52782.6 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.421
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRTVKKAGK SKSKKGKGAK KADASSSAAA AVASGPAKVW QPGVDALEEG EELQFDPEAY NYLRGFSIGW PCLSFDVVQD QLGLVRSEFP HTLYGVAGTQ
101: AEKAPWNYIG VFKLSNINGK KREPIPSSKV DADSDMDSDS SSDEEEEEET NEDIKPILHL KKVAHAGCVN RIRSMTQQPH ICATWGDTGH VQVWDFKSFL
201: NSVADSGPVA HKEDDIIHSH VPLKIFNGHK DEGYAIDWSP LVTGRLVSGD CNSCIHLWEP SSSTWDVDTK PFVGHSASVE DLQWSPTEGD VFASCSVDGK
301: ICIWDVRTEK KPCMSIKAHN ADVNVISWNR LASCMIASGC DDGSFSIRDL RFIKDDGAVV AHFEYHKHPI TSVEWSPHEA STLAVSSADH QLTIWDLSLE
401: KDAEEEAEFR AKMKEQANAP EDLPPQLLFV HQGQKDLKEL HWHPQIPGMI VSTAADGFNV LMPSNIDTTI AGADKPSLAP LG
101: AEKAPWNYIG VFKLSNINGK KREPIPSSKV DADSDMDSDS SSDEEEEEET NEDIKPILHL KKVAHAGCVN RIRSMTQQPH ICATWGDTGH VQVWDFKSFL
201: NSVADSGPVA HKEDDIIHSH VPLKIFNGHK DEGYAIDWSP LVTGRLVSGD CNSCIHLWEP SSSTWDVDTK PFVGHSASVE DLQWSPTEGD VFASCSVDGK
301: ICIWDVRTEK KPCMSIKAHN ADVNVISWNR LASCMIASGC DDGSFSIRDL RFIKDDGAVV AHFEYHKHPI TSVEWSPHEA STLAVSSADH QLTIWDLSLE
401: KDAEEEAEFR AKMKEQANAP EDLPPQLLFV HQGQKDLKEL HWHPQIPGMI VSTAADGFNV LMPSNIDTTI AGADKPSLAP LG
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.