Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0132400-01 | Rice | nucleus | 34.43 | 68.63 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 79.67 | 61.21 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 59.34 | 53.24 |
| Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 46.56 | 52.4 |
| PGSC0003DMT400034220 | Potato | nucleus | 78.36 | 50.96 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 75.41 | 48.52 |
| KRH58776 | Soybean | nucleus | 75.08 | 48.41 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 60.0 | 48.28 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 72.13 | 47.52 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 70.82 | 46.15 |
| CDY21659 | Canola | nucleus | 70.82 | 45.67 |
| CDY48712 | Canola | plastid | 70.49 | 45.65 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 70.16 | 45.63 |
| CDX81935 | Canola | nucleus | 70.82 | 45.47 |
| CDY03357 | Canola | plastid | 70.49 | 45.45 |
| KRH42676 | Soybean | nucleus | 73.44 | 45.34 |
| CDX82701 | Canola | nucleus | 57.38 | 45.1 |
| OQU82815 | Sorghum | mitochondrion | 64.92 | 43.14 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 67.54 | 43.01 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 67.21 | 42.89 |
| Os11t0134500-01 | Rice | nucleus | 65.25 | 42.8 |
| Zm00001d010850_P003 | Maize | plasma membrane | 67.21 | 42.62 |
| TraesCS4B01G131200.1 | Wheat | nucleus | 66.23 | 41.91 |
| Bra040681.1-P | Field mustard | cytosol | 49.51 | 41.71 |
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 65.9 | 41.7 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 65.57 | 41.49 |
| TraesCS5A01G139800.1 | Wheat | mitochondrion, plastid | 65.57 | 41.41 |
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 65.57 | 41.41 |
| HORVU4Hr1G026330.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 65.25 | 41.29 |
| PGSC0003DMT400061016 | Potato | cytosol | 26.23 | 18.87 |
| PGSC0003DMT400015787 | Potato | cytosol | 24.92 | 18.86 |
| PGSC0003DMT400023242 | Potato | cytosol | 18.36 | 17.72 |
| PGSC0003DMT400022498 | Potato | cytosol | 17.7 | 17.09 |
| PGSC0003DMT400006393 | Potato | nucleus | 18.36 | 16.18 |
| Os12t0132300-02 | Rice | cytosol | 1.31 | 2.19 |
| Os11t0134400-00 | Rice | cytosol | 1.31 | 2.19 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1CEF6 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG400025556 |
| PGSC:PGSC0003DMG400025556 | EnsemblPlants:PGSC0003DMT400065692 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000295CBBC | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025556]
Coordinates
chr11:+:7118508..7120829
Molecular Weight (calculated)
33695.0 Da
IEP (calculated)
4.625
GRAVY (calculated)
-0.380
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQNPNIVAS WADTGHVQVW DFSSHLNALA ESESHGASAV SSQSPLVKFG GHKDEGYAID WSPLEPGRLL SGDCKNCIYL WEPTSGTWNI DSNPFIGHTA
101: SVEDLQWSPI DPFRFASCSV DGTIALWDTR ERNSPSSTIK THKADVNVIS WNKLASNMLA SGSDDGTFCV HDIRFVKEGR DTTVDLVAYF EYHKHPITSI
201: EWSPPHAASR EASSIVAVSS SDNQLTIWDL SLERDEEEEA EFKAKMKEQV NAPTDLPPQL LFVHQGQKDL KELHWHPQIP GMVISTAADG FNILMPSNIE
301: NALPA
101: SVEDLQWSPI DPFRFASCSV DGTIALWDTR ERNSPSSTIK THKADVNVIS WNKLASNMLA SGSDDGTFCV HDIRFVKEGR DTTVDLVAYF EYHKHPITSI
201: EWSPPHAASR EASSIVAVSS SDNQLTIWDL SLERDEEEEA EFKAKMKEQV NAPTDLPPQL LFVHQGQKDL KELHWHPQIP GMVISTAADG FNILMPSNIE
301: NALPA
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.