Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48712 | Canola | plastid | 88.91 | 88.53 |
| CDY03357 | Canola | plastid | 88.91 | 88.16 |
| CDY21659 | Canola | nucleus | 88.27 | 87.53 |
| CDX81935 | Canola | nucleus | 88.49 | 87.37 |
| Bra040681.1-P | Field mustard | cytosol | 64.61 | 83.7 |
| Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 47.97 | 83.03 |
| CDX82701 | Canola | nucleus | 68.66 | 82.99 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 58.64 | 80.88 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 75.69 | 74.89 |
| Os12t0132400-01 | Rice | nucleus | 24.09 | 73.86 |
| KRH58776 | Soybean | nucleus | 73.99 | 73.36 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 45.63 | 70.16 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 69.94 | 70.09 |
| KRH42676 | Soybean | nucleus | 73.13 | 69.43 |
| PGSC0003DMT400034220 | Potato | nucleus | 68.87 | 68.87 |
| Solyc07g039200.2.1 | Tomato | nucleus | 65.25 | 66.23 |
| Os11t0134500-01 | Rice | nucleus | 63.75 | 64.3 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 54.16 | 63.98 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 51.39 | 63.59 |
| TraesCS4B01G131200.1 | Wheat | nucleus | 64.82 | 63.07 |
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 64.82 | 63.07 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 64.61 | 62.86 |
| HORVU4Hr1G026330.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 64.39 | 62.66 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 63.75 | 62.42 |
| Zm00001d010850_P003 | Maize | plasma membrane | 63.75 | 62.16 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 63.33 | 62.13 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 60.98 | 61.77 |
| OQU82815 | Sorghum | mitochondrion | 57.78 | 59.04 |
| TraesCS5A01G139800.1 | Wheat | mitochondrion, plastid | 60.77 | 59.01 |
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.77 | 59.01 |
| AT5G58230.1 | Thale cress | nucleus | 22.6 | 25.0 |
| AT2G16780.1 | Thale cress | cytosol | 20.9 | 23.61 |
| AT4G35050.1 | Thale cress | cytosol | 20.04 | 22.17 |
| AT4G29730.1 | Thale cress | nucleus | 21.54 | 20.74 |
| AT2G19520.1 | Thale cress | nucleus | 22.17 | 20.51 |
| AT1G29260.1 | Thale cress | cytosol | 13.43 | 19.87 |
| Os12t0132300-02 | Rice | cytosol | 0.85 | 2.19 |
| Os11t0134400-00 | Rice | cytosol | 0.85 | 2.19 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:816473 | ProteinID:AAD10153.1 | ProteinID:AEC06893.1 | EMBL:AF370506 |
| ArrayExpress:AT2G19540 | EnsemblPlantsGene:AT2G19540 | RefSeq:AT2G19540 | TAIR:AT2G19540 | RefSeq:AT2G19540-TAIR-G | EnsemblPlants:AT2G19540.1 |
| TAIR:AT2G19540.1 | EMBL:AY128814 | Unigene:At.24966 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0080008 |
| InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_179544.1 | PFAM:PF00400 |
| PFAM:PF12265 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 | UniProt:Q9ZUN8 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI00000A53A1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
Coordinates
chr2:+:8461748..8464534
Molecular Weight (calculated)
51406.6 Da
IEP (calculated)
4.680
GRAVY (calculated)
-0.494
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.