Factsheet for Solyc07g039200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034220	Potato	nucleus	94.81	93.39
VIT_11s0016g02270.t01	Wine grape	nucleus	78.79	76.79
Os12t0132400-01	Rice	nucleus	25.11	75.82
KRH58776	Soybean	nucleus	73.59	71.88
Solyc05g014090.1.1	Tomato	mitochondrion	61.04	71.03
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	70.56	70.41
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	57.36	69.92
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	70.78	69.87
KRH42676	Soybean	nucleus	74.24	69.43
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	39.83	67.9
Bra040681.1-P	Field mustard	cytosol	52.16	66.57
CDY48712	Canola	plastid	67.53	66.24
CDY03357	Canola	plastid	67.75	66.17
CDY21659	Canola	nucleus	67.32	65.75
CDX81935	Canola	nucleus	67.32	65.47
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	66.23	65.25
TraesCS4B01G131200.1	Wheat	nucleus	67.53	64.73
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.1	64.32
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	66.88	64.11
Os11t0134500-01	Rice	nucleus	64.29	63.87
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	66.02	63.28
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	65.58	63.26
Solyc05g014070.1.1	Tomato	cytosol, mitochondrion, nucleus	16.02	62.71
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	64.72	62.55
Zm00001d010850_P003	Maize	plasma membrane	64.94	62.37
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.94	62.11
CDX82701	Canola	nucleus	51.73	61.6
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	64.07	61.28
CDY35872	Canola	cytosol, nucleus, plastid	44.37	60.29
OQU82815	Sorghum	mitochondrion	58.23	58.61
Solyc01g111590.2.1	Tomato	cytosol	22.08	25.31
Solyc01g104510.2.1	Tomato	nucleus	21.43	23.35
Solyc03g121580.2.1	Tomato	nucleus	22.08	22.17
Solyc07g039330.2.1	Tomato	nucleus	17.53	21.49
Solyc03g062940.2.1	Tomato	cytosol	13.2	19.3
Solyc07g039320.2.1	Tomato	nucleus	4.33	13.16
Os12t0132300-02	Rice	cytosol	0.87	2.19
Os11t0134400-00	Rice	cytosol	0.87	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CDP6	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc07g039200.2
EnsemblPlants:Solyc07g039200.2.1	UniParc:UPI000276B425	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:45595844..45600081

Molecular Weight (calculated)

50438.1 Da

IEP (calculated)

5.303

GRAVY (calculated)

-0.391

Length

462 amino acids

Sequence
(BLAST)

001: MVRSLKNPKK AKRKNKAKKG EGSSDSVPSL PAKVWQPGVD KLEEGEELQC DASAYNSLHA FHIGWPCLSF DVLRDSLGLV RTEFPHSVYC VAGSQAEKSS
101: WNSIGIFKLS KISGKRRDLV PDKTGDDSDM DGDSSDSDEE EEAGSGTPVL QLRKVFHEGC VNRIRAMTQK PDIVASWGDT GHVQSDLSHG ASAVSSQAPL
201: FKFGGHKDEG YAIDWSPRVP GKLVSGLMLL LISAGDCKNC IHLWEPTSGA TWNVGAKSYI GHTASVEDLQ WSPTEDTVFA SCSVDRNIII WDTRMGNPLA
301: ATITAHKADV NVISWNKLAS CMLASGSDDG TFSIQDLRMV KDGDSVVAHF DYHKHPITSV EWSPHEASTL AVSSSDNQLT IWDLSLERDE EEEAEFKSKM
401: KEQVNAPTDL PPQLLFVHQG QKDLKELHWH SQIPGMVVST AADGFNILMP SNIETAIPAN VA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.