Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121580.2.1 | Tomato | nucleus | 56.58 | 18.7 |
| Solyc05g014070.1.1 | Tomato | cytosol, mitochondrion, nucleus | 7.89 | 10.17 |
| Solyc01g104510.2.1 | Tomato | nucleus | 23.03 | 8.25 |
| Solyc01g111590.2.1 | Tomato | cytosol | 19.08 | 7.2 |
| Solyc07g039200.2.1 | Tomato | nucleus | 13.16 | 4.33 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 10.53 | 4.22 |
| Solyc07g039330.2.1 | Tomato | nucleus | 9.87 | 3.98 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.18 | 3.67 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 5.92 | 2.27 |
| Solyc03g062940.2.1 | Tomato | cytosol | 4.61 | 2.22 |
Protein Annotations
| EnsemblPlants:Solyc07g039320.2.1 | EnsemblPlantsGene:Solyc07g039320.2 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Histone-bd_RBBP4_N | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF184 | PFAM:PF12265 |
| UniParc:UPI000276B431 | UniProt:K4CDQ8 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7:+:47146013..47154084
Molecular Weight (calculated)
17199.4 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.826
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: METPSSQPKR RGRPKGSAAK SKDEREKEPH SSGKMRGSAS KKAAAVDEEY VQWKSLVAVL YDWFANHNLI WPSLSCRWGA VVEEGKYKNR QRLYLSEQTD
101: KSVPNTLIIA NCDVVKPRVA AENHIANFNE EARSPFVKKY KTIIHPGEVK TS
101: KSVPNTLIIA NCDVVKPRVA AENHIANFNE EARSPFVKKY KTIIHPGEVK TS
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Arabidopsis Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.