Factsheet for Solyc07g039330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35867	Canola	cytosol	48.81	64.79
GSMUA_Achr4P08720_001	Banana	cytosol	66.84	61.92
CDY29763	Canola	endoplasmic reticulum	51.46	57.57
Solyc03g121580.2.1	Tomato	nucleus	69.23	56.74
GSMUA_Achr7P24160_001	Banana	nucleus	35.81	56.25
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	34.22	56.09
EES01357	Sorghum	nucleus	65.52	54.53
CDX81933	Canola	nucleus	69.5	54.13
Os01t0710000-01	Rice	nucleus	64.99	54.08
VIT_11s0016g02170.t01	Wine grape	nucleus	72.41	53.74
Zm00001d052871_P001	Maize	cytosol	4.24	53.33
TraesCS3D01G251300.2	Wheat	nucleus	65.78	52.65
TraesCS3B01G280400.1	Wheat	nucleus	65.78	52.65
KRH12388	Soybean	nucleus	70.82	52.56
Bra040678.1-P	Field mustard	nucleus	69.23	52.52
TraesCS3A01G250900.2	Wheat	cytosol	65.52	52.44
KRH37388	Soybean	nucleus	70.82	52.05
CDY21661	Canola	nucleus	69.76	51.98
Bra031085.1-P	Field mustard	nucleus	69.23	51.79
AT2G19520.1	Thale cress	nucleus	69.5	51.68
CDY48711	Canola	nucleus	68.7	51.49
CDY03358	Canola	nucleus	68.17	50.99
CDY06779	Canola	nucleus	65.52	50.93
Bra011133.1-P	Field mustard	nucleus	64.19	50.84
CDY43523	Canola	nucleus	63.93	50.74
Bra036717.1-P	Field mustard	nucleus	63.66	50.0
AT4G29730.1	Thale cress	nucleus	64.46	49.9
HORVU3Hr1G066930.1	Barley	plastid	65.78	48.72
Zm00001d011705_P002	Maize	cytosol	66.58	48.27
GSMUA_Achr7P09120_001	Banana	nucleus	55.17	45.71
Zm00001d043682_P002	Maize	cytosol, plastid	62.6	44.61
CDX82696	Canola	nucleus	50.93	43.64
Zm00001d050047_P001	Maize	nucleus	23.61	32.25
Zm00001d043683_P001	Maize	cytosol	17.51	32.04
Solyc01g111590.2.1	Tomato	cytosol	27.85	26.05
Solyc01g104510.2.1	Tomato	nucleus	28.12	25.0
GSMUA_Achr3P32330_001	Banana	cytosol	11.41	23.89
Solyc05g014090.1.1	Tomato	mitochondrion	20.95	19.9
Solyc03g062940.2.1	Tomato	cytosol	15.92	18.99
CDY70287	Canola	nucleus	8.75	18.03
Solyc07g039200.2.1	Tomato	nucleus	21.49	17.53
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	19.89	16.2
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	15.12	15.04
Solyc07g039320.2.1	Tomato	nucleus	3.98	9.87
Solyc05g014070.1.1	Tomato	cytosol, mitochondrion, nucleus	1.06	3.39

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CDQ9	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF85	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc07g039330.2	EnsemblPlants:Solyc07g039330.2.1
UniParc:UPI000276B432	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr7:+:47164754..47169911

Molecular Weight (calculated)

41146.1 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.294

Length

377 amino acids

Sequence
(BLAST)

001: MFESIELFQL CTLLLHPGGS KVVSERLSAQ VNRIRELPQN KNIVATHTDG PEVLIWDIEA QPNKHAVYGA AASRPDLVLS GHQDNAEFAL ALSPMEPFVL
101: SGGKDKTVVL WSIQDHISTL AADATKSAGS GGSIIKSADN PSIGPRGIFH GHADTVEDVQ FCPSSSQEFC SVGDDSCLIL WDARVGNNPA VKVEKAHDAD
201: LHCVDWNPHN DNLIITGSAD NSVRLFDRRN LTSDGVGSPV HMFEHHTAAV LCVQWCPNRS SVFGSCAEDG LLNIWDYEKV GAAKDSDIES DEDEEESPPG
301: LFFQHAGHRD KIVDFHWNAC DPWTIVSVSD DAETSGGGGT LQIWRMIDML YRPKAEVLAE MQHFKDHVGK CTPKCKG

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.