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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH12388 Soybean nucleus 97.66 98.62
CDY29763 Canola endoplasmic reticulum 54.58 83.09
GSMUA_Achr4P08720_001 Banana cytosol 65.89 83.05
CDX81933 Canola nucleus 76.61 81.2
AT2G19520.1 Thale cress nucleus 79.73 80.67
Bra040678.1-P Field mustard nucleus 77.97 80.48
CDY21661 Canola nucleus 78.95 80.04
Bra031085.1-P Field mustard nucleus 78.56 79.96
CDY48711 Canola nucleus 78.36 79.92
CDY03358 Canola nucleus 77.97 79.37
Bra036717.1-P Field mustard nucleus 73.88 78.96
KRH23320 Soybean endoplasmic reticulum 70.57 78.87
EES01357 Sorghum nucleus 69.59 78.81
Os01t0710000-01 Rice nucleus 69.2 78.37
TraesCS3A01G250900.2 Wheat cytosol 70.76 77.07
TraesCS3B01G280400.1 Wheat nucleus 70.57 76.86
Zm00001d052871_P001 Maize cytosol 4.48 76.67
TraesCS3D01G251300.2 Wheat nucleus 70.37 76.65
CDY70287 Canola nucleus 26.9 75.41
VIT_11s0016g02170.t01 Wine grape nucleus 73.88 74.61
Bra011133.1-P Field mustard nucleus 68.42 73.74
AT4G29730.1 Thale cress nucleus 69.98 73.72
CDY06779 Canola nucleus 69.4 73.4
CDY43523 Canola nucleus 67.84 73.26
CDY35867 Canola cytosol 40.55 73.24
CDX82696 Canola nucleus 62.38 72.73
HORVU3Hr1G066930.1 Barley plastid 71.54 72.1
Zm00001d043683_P001 Maize cytosol 28.46 70.87
Solyc07g039330.2.1 Tomato nucleus 52.05 70.82
Zm00001d011705_P002 Maize cytosol 68.23 67.31
GSMUA_Achr3P32330_001 Banana cytosol 23.2 66.11
Zm00001d043682_P002 Maize cytosol, plastid 68.03 65.97
KRH10009 Soybean cytosol, mitochondrion, nucleus 50.68 65.82
GSMUA_Achr7P24160_001 Banana nucleus 29.63 63.33
GSMUA_Achr7P09120_001 Banana nucleus 54.39 61.32
Zm00001d053451_P001 Maize cytosol, nucleus, plastid 26.51 59.13
Zm00001d050047_P001 Maize nucleus 21.25 39.49
KRH58491 Soybean nucleus 27.1 32.71
KRH42369 Soybean nucleus 27.1 32.71
KRH29002 Soybean nucleus 24.95 31.76
KRH24317 Soybean nucleus 24.56 31.42
KRH58776 Soybean nucleus 21.83 23.68
KRH42676 Soybean nucleus 21.44 22.27
KRH21268 Soybean cytosol 13.65 22.01
KRH11018 Soybean cytosol 12.48 20.78
Protein Annotations
EntrezGene:100779302MapMan:12.2.1.3Gene3D:2.130.10.10EMBL:ACUP02005443EnsemblPlantsGene:GLYMA_09G063100GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
InterPro:Histone-bd_RBBP4_NUniProt:I1L1H2InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986EnsemblPlants:KRH37388
ProteinID:KRH37388ProteinID:KRH37388.1PFAM:PF00400PFAM:PF12265PFscan:PS50082PFscan:PS50294
PANTHER:PTHR22850PANTHER:PTHR22850:SF184SMART:SM00320SUPFAM:SSF50978UniParc:UPI000233916FInterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg::
Description
hypothetical protein
Coordinates
chr9:-:6038506..6046140
Molecular Weight (calculated)
57120.7 Da
IEP (calculated)
6.546
GRAVY (calculated)
-0.690
Length
513 amino acids
Sequence
(BLAST)
001: METPPPQQGV VKKKETRGRK PKPKDEHGKG LKEGRKTQQQ QQQQQQHHHQ QQQQQQDQPS VDEKYTQWKS LVPVLYDWLA NHNLVWPSLS CRWGPQLEQA
101: TYKNRQRLYL SEQTDGSVPN TLVIANCEVV KPRVAAAEHI SQFNEEARSP FVKKYKTIIH PGEVNRIREL PQNSKIVATH TDSPDVLVWD VESQPNRHAV
201: LGATNSRPDL ILTGHQDNAE FALAMCPTEP YVLSGGKDKT VVLWSIEDHI TSAATDSKSG GSIIKQNSKS GEGNDKTADG PTVGPRGIYC GHEDTVEDVA
301: FCPSSAQEFC SVGDDSCLIL WDARVGSSPV VKVEKAHNAD LHCVDWNPHD DNLILTGSAD NSVRMFDRRN LTTNGVGSPI HKFEGHKAAV LCVQWSPDKS
401: SVFGSSAEDG LLNIWDYEKV GKKIERSGKS ISSPPGLFFQ HAGHRDKVVD FHWNAYDPWT IVSVSDDCES TGGGGTLQIW RMSDLIYRPE DEVLAELEKF
501: KSHVVACASK TEK
Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Arabidopsis Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.