CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	KRH25071	AT4G05420.1	18223036
AT4G35050.1	KRH43086	AT4G05420.1	18223036
AT4G35050.1	KRH59212	AT4G05420.1	18223036
AT4G35050.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24317	Soybean	nucleus	92.31	92.77
VIT_03s0038g02430.t01	Wine grape	cytosol	69.73	70.07
PGSC0003DMT400015787	Potato	cytosol	67.49	67.49
Solyc01g111590.2.1	Tomato	cytosol	67.25	67.25
Bra037289.1-P	Field mustard	cytosol	66.5	64.89
Bra001997.1-P	Field mustard	nucleus	67.25	64.83
CDY47479	Canola	cytosol	66.5	64.73
CDY26787	Canola	cytosol	66.25	64.49
AT2G16780.1	Thale cress	cytosol	66.25	64.34
CDY70131	Canola	cytosol	32.01	61.72
AT4G35050.1	Thale cress	cytosol	64.52	61.32
HORVU2Hr1G092350.1	Barley	cytosol	21.09	61.15
GSMUA_Achr8P33950_001	Banana	nucleus	59.06	58.91
GSMUA_Achr1P26410_001	Banana	nucleus	58.56	57.99
Os09t0540600-01	Rice	cytosol	56.33	55.37
EER97107	Sorghum	cytosol	54.59	54.59
Zm00001d022614_P001	Maize	cytosol	53.6	53.6
TraesCS5A01G331900.1	Wheat	cytosol	53.6	53.33
TraesCS5B01G332200.1	Wheat	cytosol	53.85	53.19
TraesCS5D01G337800.1	Wheat	cytosol	52.85	52.72
KRH42369	Soybean	nucleus	54.84	52.0
KRH58491	Soybean	nucleus	54.84	52.0
HORVU5Hr1G084160.2	Barley	cytosol	50.87	48.93
KRH23320	Soybean	endoplasmic reticulum	31.02	27.23
KRH21268	Soybean	cytosol	20.1	25.47
KRH11018	Soybean	cytosol	19.35	25.32
KRH12388	Soybean	nucleus	31.76	25.2
KRH37388	Soybean	nucleus	31.76	24.95
KRH10009	Soybean	cytosol, mitochondrion, nucleus	21.84	22.28
KRH58776	Soybean	nucleus	24.81	21.14
KRH42676	Soybean	nucleus	25.81	21.05

Protein Annotations

EntrezGene:100799018	MapMan:12.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02006776	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_11G091500
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	UniProt:I1LIH2	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH29002	ProteinID:KRH29002	ProteinID:KRH29002.1	PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000233C52F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6922211..6925704

Molecular Weight (calculated)

45627.8 Da

IEP (calculated)

4.513

GRAVY (calculated)

-0.547

Length

403 amino acids

Sequence
(BLAST)

001: MAEEYEEEGG EIEQEFSVWK KNTPLLYDFF ISHPLQWPSL TVHWLPSSPH PHSHPSFNLH KLLLATHTSD GESNFLMLAD AYLPTDTSQP IVASDPNYPV
101: LPKVEISQRI PVDGEVNRAR CMLQNPSIVA AKTCNSEVYV FDFTKEHGSE CNPDLRLRGH DKEGYGLSWS PFKNGYLLSG SHDHKVCLWD VPAAASQDKV
201: LDAFHVYEGH ENVVEDVSWN LKDENMFGSG GDDCKLIIWD LRTNKPQQSI KPHEKEVNFL SFNPYNEWIL ATASSDTIVG LFDTRKLAVP LHVLTSHTDE
301: VFQVEWDPNH ENVLASSGAD RRLMVWDLNR VGDEQIEGDG EGGPPELLFS HGGHKGKISD FSWNRNQPWV ITSVAEDNSF HVWQMAESIY NDGDDDNMWT
401: AND

Best Arabidopsis Sequence Match ( AT4G35050.1 )
(BLAST)

001: MAAEEGKDEA GLDQVEEEFS IWKRNTPFLY DLMISHPLEW PSLTLHWVPS TPIPYSKDPY FAVHKLILGT HTSGGAQDFL MVADVVIPTP DAEPGLGGRD
101: QEPIVPKVEI KQKIRVDGEV NRARCMPQKP TLVGAKTSGS EVFLFDYARL SGKPQTSECD PDLRLMGHEQ EGYGLAWSSF KEGYLLSGSQ DQRICLWDVS
201: ATATDKVLNP MHVYEGHQSI IEDVAWHMKN ENIFGSAGDD CQLVIWDLRT NQMQHQVKVH EREINYLSFN PFNEWVLATA SSDSTVALFD LRKLTAPLHV
301: LSKHEGEVFQ VEWDPNHETV LASSGEDRRL MVWDINRVGD EQLEIELDAE DGPPELLFSH GGHKAKISDF AWNKDEPWVI SSVAEDNSLQ VWQMAESIYR
401: EDDEDEDDDD EGNQNAQHSN ENQK

Arabidopsis Description

MSI3At4g35050 [Source:UniProtKB/TrEMBL;Acc:Q5HZ33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.