Factsheet for PGSC0003DMT400015787

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	PGSC0003DMT400009595	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111590.2.1	Tomato	cytosol	97.77	97.77
VIT_03s0038g02430.t01	Wine grape	cytosol	72.46	72.82
KRH24317	Soybean	nucleus	67.49	67.83
KRH29002	Soybean	nucleus	67.49	67.49
CDY47479	Canola	cytosol	68.98	67.15
Bra037289.1-P	Field mustard	cytosol	68.73	67.07
CDY26787	Canola	cytosol	68.73	66.91
AT2G16780.1	Thale cress	cytosol	68.49	66.51
Bra001997.1-P	Field mustard	nucleus	68.24	65.79
AT4G35050.1	Thale cress	cytosol	66.75	63.44
CDY70131	Canola	cytosol	32.26	62.2
HORVU2Hr1G092350.1	Barley	cytosol	21.09	61.15
GSMUA_Achr8P33950_001	Banana	nucleus	60.79	60.64
GSMUA_Achr1P26410_001	Banana	nucleus	59.31	58.72
EER97107	Sorghum	cytosol	56.33	56.33
TraesCS5B01G332200.1	Wheat	cytosol	56.08	55.39
Os09t0540600-01	Rice	cytosol	56.33	55.37
TraesCS5A01G331900.1	Wheat	cytosol	55.58	55.31
TraesCS5D01G337800.1	Wheat	cytosol	55.34	55.2
Zm00001d022614_P001	Maize	cytosol	54.84	54.84
PGSC0003DMT400061016	Potato	cytosol	56.33	53.54
HORVU5Hr1G084160.2	Barley	cytosol	52.11	50.12
PGSC0003DMT400006393	Potato	nucleus	24.07	28.03
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	18.86	24.92
PGSC0003DMT400022498	Potato	cytosol	18.11	23.1
PGSC0003DMT400023242	Potato	cytosol	17.87	22.78
PGSC0003DMT400034220	Potato	nucleus	25.06	21.54

Protein Annotations

EntrezGene:102599978	MapMan:12.2.1.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1A6L2	PFAM:PF00400	PFAM:PF12265
EnsemblPlantsGene:PGSC0003DMG400006171	PGSC:PGSC0003DMG400006171	EnsemblPlants:PGSC0003DMT400015787	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294A399
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006359699.1
SEG:seg	:	:	:	:	:

Description

Nucleosome/chromatin assembly factor group [Source:PGSC_GENE;Acc:PGSC0003DMG400006171]

Coordinates

chr1:-:87569991..87573211

Molecular Weight (calculated)

45256.6 Da

IEP (calculated)

4.452

GRAVY (calculated)

-0.482

Length

403 amino acids

Sequence
(BLAST)

001: MAEEEMEAAG ETEQEVEEEF AVWKKNTPLL YDLVVCHALE WPSLTVQWLP SPTTDDGAFA VHKLILGTHT SDDCPNFLMV ANVHLPRNPA SGLEHNLMNP
101: QIPKVEIVQK IHVDGEVNRA RCMPQKPAVV AAKTSSSEVY VFDSAKQPLD HEGGSCNPDV RLRGHDKEGY GLSWSPFKEG FLLSGSNDQK ICLWNVSALP
201: QDKVLMAHHT YEEHEDVVED VSWHPKNENL FGSVGDDCRL IIWDLRTNKA QQSVLAHEKE VNYLSFNSYT EWVLATASSD STVGLFDMRK LSSPLHVFGS
301: HTDEVFQVEW DPNHETVLAS SGGDRRLMVW DLNRIGDEQL EGEAEDGPSE LLFSHGGHKA KISDFSWNKN EAWVISSVAE DNCVQVWQMA ESIYREDNDN
401: GNC

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.