Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26787 | Canola | cytosol | 89.64 | 89.86 |
| Bra037289.1-P | Field mustard | cytosol | 89.4 | 89.83 |
| CDY47479 | Canola | cytosol | 89.16 | 89.37 |
| Bra001997.1-P | Field mustard | nucleus | 89.88 | 89.23 |
| CDY70131 | Canola | cytosol | 41.45 | 82.3 |
| AT4G35050.1 | Thale cress | cytosol | 82.65 | 80.9 |
| VIT_03s0038g02430.t01 | Wine grape | cytosol | 67.23 | 69.58 |
| Solyc01g111590.2.1 | Tomato | cytosol | 67.23 | 69.23 |
| PGSC0003DMT400015787 | Potato | cytosol | 66.51 | 68.49 |
| KRH24317 | Soybean | nucleus | 64.58 | 66.83 |
| KRH29002 | Soybean | nucleus | 64.34 | 66.25 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 57.35 | 58.91 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 57.59 | 58.72 |
| HORVU2Hr1G092350.1 | Barley | cytosol | 18.31 | 54.68 |
| AT5G58230.1 | Thale cress | nucleus | 54.46 | 53.3 |
| EER97107 | Sorghum | cytosol | 50.6 | 52.11 |
| Os09t0540600-01 | Rice | cytosol | 50.6 | 51.22 |
| Zm00001d022614_P001 | Maize | cytosol | 49.64 | 51.12 |
| TraesCS5A01G331900.1 | Wheat | cytosol | 49.88 | 51.11 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 49.64 | 50.99 |
| TraesCS5B01G332200.1 | Wheat | cytosol | 49.88 | 50.74 |
| HORVU5Hr1G084160.2 | Barley | cytosol | 46.75 | 46.3 |
| AT2G19520.1 | Thale cress | nucleus | 32.05 | 26.23 |
| AT4G29730.1 | Thale cress | nucleus | 29.4 | 25.05 |
| AT1G29260.1 | Thale cress | cytosol | 17.35 | 22.71 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 23.61 | 20.9 |
Protein Annotations
| MapMan:12.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:816179 | ProteinID:AAD24611.1 | ProteinID:AEC06537.1 | EMBL:AF016847 |
| ArrayExpress:AT2G16780 | EnsemblPlantsGene:AT2G16780 | RefSeq:AT2G16780 | TAIR:AT2G16780 | RefSeq:AT2G16780-TAIR-G | EnsemblPlants:AT2G16780.1 |
| TAIR:AT2G16780.1 | EMBL:AY056814 | Unigene:At.25135 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0080008 |
| InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | Symbol:MSI2 | RefSeq:NP_179269.1 |
| UniProt:O22468 | PFAM:PF00400 | PFAM:PF12265 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR22850 | PANTHER:PTHR22850:SF137 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000000E30 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
Coordinates
chr2:-:7281374..7283686
Molecular Weight (calculated)
46706.4 Da
IEP (calculated)
4.405
GRAVY (calculated)
-0.492
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.