Factsheet for AT4G29730.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43523	Canola	nucleus	76.8	78.74
Bra011133.1-P	Field mustard	nucleus	76.59	78.36
CDY06779	Canola	nucleus	77.62	77.94
AT2G19520.1	Thale cress	nucleus	77.41	74.36
GSMUA_Achr4P08720_001	Banana	cytosol	59.96	71.74
KRH12388	Soybean	nucleus	73.51	70.47
Zm00001d052871_P001	Maize	cytosol	4.31	70.0
KRH37388	Soybean	nucleus	73.72	69.98
EES01357	Sorghum	nucleus	64.89	69.76
Os01t0710000-01	Rice	nucleus	64.68	69.54
TraesCS3B01G280400.1	Wheat	nucleus	65.5	67.73
TraesCS3A01G250900.2	Wheat	cytosol	65.5	67.73
TraesCS3D01G251300.2	Wheat	nucleus	65.3	67.52
VIT_11s0016g02170.t01	Wine grape	nucleus	67.35	64.57
Solyc07g039330.2.1	Tomato	nucleus	49.9	64.46
HORVU3Hr1G066930.1	Barley	plastid	66.53	63.65
Zm00001d011705_P002	Maize	cytosol	62.83	58.85
Zm00001d043682_P002	Maize	cytosol, plastid	62.83	57.84
GSMUA_Achr7P24160_001	Banana	nucleus	28.34	57.5
Zm00001d043683_P001	Maize	cytosol	23.82	56.31
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	26.28	55.65
GSMUA_Achr7P09120_001	Banana	nucleus	51.13	54.73
GSMUA_Achr3P32330_001	Banana	cytosol	19.71	53.33
Zm00001d050047_P001	Maize	nucleus	21.56	38.04
AT5G58230.1	Thale cress	nucleus	27.1	31.13
AT4G35050.1	Thale cress	cytosol	26.9	30.9
AT2G16780.1	Thale cress	cytosol	25.05	29.4
AT1G29260.1	Thale cress	cytosol	14.37	22.08
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	20.74	21.54

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:829094	ProteinID:AEE85666.1	EMBL:AK176425	ArrayExpress:AT4G29730
EnsemblPlantsGene:AT4G29730	RefSeq:AT4G29730	TAIR:AT4G29730	RefSeq:AT4G29730-TAIR-G	EnsemblPlants:AT4G29730.1	TAIR:AT4G29730.1
Unigene:At.31893	EMBL:BT010610	ProteinID:CAB45333.1	ProteinID:CAB79731.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010629	GO:GO:0016043	GO:GO:0016569	GO:GO:0080008	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	Symbol:NFC5	RefSeq:NP_194702.2	PFAM:PF00400
PFAM:PF12265	PO:PO:0000293	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF184	UniProt:Q9SU78	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00001D6882	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

MSI5WD-40 repeat-containing protein MSI5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU78]

Coordinates

chr4:-:14558927..14562601

Molecular Weight (calculated)

53997.3 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.516

Length

487 amino acids

Sequence
(BLAST)

001: MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL
101: YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD
201: DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW
301: DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG
401: KKSERATKTP DGLFFQHAGH RDKVVDFHWS LLNPWTIVSV SDNCESIGGG GTLQIWRMSD LIYRPEDEVL TELEKFKSHV FTCTSKS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.