Factsheet for Bra011133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43523	Canola	nucleus	98.32	98.53
AT4G29730.1	Thale cress	nucleus	78.36	76.59
Zm00001d052871_P001	Maize	cytosol	4.62	73.33
Bra040678.1-P	Field mustard	nucleus	75.63	72.43
Bra031085.1-P	Field mustard	nucleus	75.21	71.03
GSMUA_Achr4P08720_001	Banana	cytosol	60.71	71.01
Bra036717.1-P	Field mustard	nucleus	70.59	70.0
KRH12388	Soybean	nucleus	73.74	69.09
EES01357	Sorghum	nucleus	65.55	68.87
KRH37388	Soybean	nucleus	73.74	68.42
Os01t0710000-01	Rice	nucleus	64.5	67.77
TraesCS3B01G280400.1	Wheat	nucleus	66.18	66.88
TraesCS3A01G250900.2	Wheat	cytosol	66.18	66.88
TraesCS3D01G251300.2	Wheat	nucleus	65.97	66.67
Solyc07g039330.2.1	Tomato	nucleus	50.84	64.19
VIT_11s0016g02170.t01	Wine grape	nucleus	67.44	63.19
HORVU3Hr1G066930.1	Barley	plastid	67.44	63.06
Zm00001d011705_P002	Maize	cytosol	63.66	58.27
Zm00001d043682_P002	Maize	cytosol, plastid	63.45	57.09
Zm00001d043683_P001	Maize	cytosol	24.58	56.8
GSMUA_Achr7P24160_001	Banana	nucleus	28.36	56.25
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	26.89	55.65
GSMUA_Achr7P09120_001	Banana	nucleus	52.73	55.16
GSMUA_Achr3P32330_001	Banana	cytosol	20.38	53.89
Zm00001d050047_P001	Maize	nucleus	20.59	35.51
Bra037289.1-P	Field mustard	cytosol	27.94	32.2
Bra020379.1-P	Field mustard	cytosol	27.73	31.73
Bra002667.1-P	Field mustard	nucleus	28.36	31.69
Bra001997.1-P	Field mustard	nucleus	27.1	30.86
Bra040681.1-P	Field mustard	cytosol	16.6	21.82
Bra010844.1-P	Field mustard	cytosol	14.5	21.77
Bra032295.1-P	Field mustard	cytosol	14.29	21.45
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.18	21.4

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra011133	EnsemblPlants:Bra011133.1	EnsemblPlants:Bra011133.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0008152	GO:GO:0010629	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4D3S9	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254551F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT4G29730 (E=5e-123) NFC5, MSI5 | NFC5 (Nucleosome/chromatin assembly factor group C 5)

Coordinates

chrA01:+:3743597..3746706

Molecular Weight (calculated)

52553.8 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.522

Length

476 amino acids

Sequence
(BLAST)

001: MEREVAAKAR REAETPATYI GLKTRGQRAK LNNGSVSASS QQQRSTEKKK RKSHKPIVDK KYSQWKTLVP ILYDSLSNQS LVWPCLSCRW GPQIEQALAK
101: NQQRLYLTEQ TNGSVPNTLV VATCEAVKKQ LNGKACSPFV KKYKTIIHPG EVNRIRELPQ NSKIVATHTD SPDVLIWDTE TQPDRHAVLG APHSRPDLIL
201: TGHQDNAEFA LAMFPTEPFV LSGGKDKSVV LWSIQDHITT AGSNKTGGRS VGPRGVYHGH EDTVEDVAFC PSSAQEFCSV GDDSCLILWD ARTGSGPAMK
301: VEKAHDADLH CVDWNPHDNN LILTGSADNT VRLFDRRNLT SNGVGSPIYK FEGHNASVLS VQWSPDKSSV FGSSAEDGLL NIWDYDKLGK KSARAPKSPP
401: GLFFQHAGHR DNVVDFHWNV LEPWTIVSVS GNCESNGGGG TLQIWRMSGL IYRPEDEVLA ELENFKSQVF SCASRP

Best Arabidopsis Sequence Match ( AT4G29730.1 )
(BLAST)

001: MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL
101: YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD
201: DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW
301: DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG
401: KKSERATKTP DGLFFQHAGH RDKVVDFHWS LLNPWTIVSV SDNCESIGGG GTLQIWRMSD LIYRPEDEVL TELEKFKSHV FTCTSKS

Arabidopsis Description

MSI5WD-40 repeat-containing protein MSI5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.