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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G58230.1 Bra032592.1-P AT1G02580.1 12970192
AT5G58230.1 Bra033334.1-P AT1G02580.1 12970192
AT5G58230.1 Bra015397.1-P AT1G05190.1 23778966
AT5G58230.1 Bra032481.1-P AT1G05190.1 23778966
AT5G58230.1 Bra005553.1-P AT2G32840.1 23778966
AT5G58230.1 Bra000196.1-P AT2G40630.1 23778966
AT5G58230.1 Bra016979.1-P AT2G40630.1 23778966
AT5G58230.1 Bra027857.1-P AT2G41840.1 23778966
AT5G58230.1 Bra035439.1-P AT2G41840.1 23778966
AT5G58230.1 Bra001094.1-P AT3G03960.1 23778966
AT5G58230.1 Bra031959.1-P AT3G03960.1 23778966
AT5G58230.1 Bra036422.1-P AT3G03960.1 23778966
AT5G58230.1 Bra001773.1-P AT3G20050.1 23778966
AT5G58230.1 Bra035820.1-P AT3G20050.1 23778966
AT5G58230.1 Bra038252.1-P AT3G20050.1 23778966
AT5G58230.1 Bra023933.1-P AT3G20740.1 12970192
AT5G58230.1 Bra023933.1-P AT3G20740.1 18812497
AT5G58230.1 Bra023933.1-P AT3G20740.1 23778966
AT5G58230.1 Bra015039.1-P AT3G24440.1 23778966
AT5G58230.1 Bra015040.1-P AT3G24440.1 23778966
AT5G58230.1 Bra012916.1-P AT3G49910.1 23778966
AT5G58230.1 Bra029984.1-P AT3G49910.1 23778966
AT5G58230.1 Bra036038.1-P AT3G49910.1 23778966
AT5G58230.1 Bra003237.1-P AT3G56340.1 23778966
AT5G58230.1 Bra007238.1-P AT3G56340.1 23778966
AT5G58230.1 Bra014697.1-P AT3G56340.1 23778966
AT5G58230.1 Bra036300.1-P AT4G02020.1 23778966
AT5G58230.1 Bra021078.1-P AT4G16845.1 23778966
AT5G58230.1 Bra040097.1-P AT4G16845.1 23778966
AT5G58230.1 Bra012564.1-P AT4G18960.1 23778966
AT5G58230.1 Bra013364.1-P AT4G18960.1 23778966
AT5G58230.1 Bra010412.1-P AT4G27090.1 23778966
AT5G58230.1 Bra019070.1-P AT4G27090.1 23778966
AT5G58230.1 Bra026380.1-P AT4G27090.1 23778966
AT5G58230.1 Bra010348.1-P AT4G29000.1 23778966
AT5G58230.1 Bra011075.1-P AT4G29000.1 23778966
AT5G58230.1 Bra024171.1-P AT4G29000.1 23778966
AT5G58230.1 Bra040131.1-P AT4G38130.1 23778966
AT5G58230.1 Bra006051.1-P AT5G10140.1 23778966
AT5G58230.1 Bra009055.1-P AT5G10140.1 23778966
AT5G58230.1 Bra022771.1-P AT5G10140.1 23778966
AT5G58230.1 Bra028599.1-P AT5G10140.1 23778966
AT5G58230.1 Bra006276.1-P AT5G15020.1 23778966
AT5G58230.1 Bra023501.1-P AT5G15020.1 23778966
AT5G58230.1 Bra017569.1-P AT5G46210.1 21240189
AT5G58230.1 Bra022023.1-P AT5G46210.1 21240189
AT5G58230.1 Bra025031.1-P AT5G46210.1 21240189
AT5G58230.1 Bra015200.1-P AT5G51230.1 23778966
AT5G58230.1 Bra022541.1-P AT5G51230.1 23778966
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32715 Canola nucleus 99.76 99.76
AT5G58230.1 Thale cress nucleus 81.73 80.19
VIT_16s0013g01550.t01 Wine grape nucleus 78.61 77.12
PGSC0003DMT400061016 Potato cytosol 78.37 76.89
Solyc01g104510.2.1 Tomato nucleus 77.88 76.42
GSMUA_Achr4P31680_001 Banana nucleus 76.44 75.18
KRH42369 Soybean nucleus 76.68 75.06
KRH58491 Soybean nucleus 76.44 74.82
Bra002667.1-P Field mustard nucleus 75.72 73.94
TraesCS5D01G385600.1 Wheat nucleus 75.24 73.13
Os03t0640100-01 Rice cytosol 75.24 73.13
TraesCS5B01G378700.1 Wheat nucleus 75.0 72.9
TraesCSU01G072700.1 Wheat nucleus 74.76 72.66
TraesCS5D01G385800.1 Wheat cytosol 38.94 72.65
Zm00001d033248_P002 Maize cytoskeleton, cytosol, nucleus 74.76 72.16
Zm00001d033247_P001 Maize nucleus 74.52 71.93
Zm00001d033252_P001 Maize cytosol, nucleus, plastid 19.95 70.94
Zm00001d013702_P001 Maize nucleus 72.12 69.61
GSMUA_Achr5P02390_001 Banana cytosol 67.31 66.67
OQU91278 Sorghum cytosol, nucleus, plastid 75.0 51.32
Bra037289.1-P Field mustard cytosol 50.0 50.36
Bra001997.1-P Field mustard nucleus 50.48 50.24
Bra011133.1-P Field mustard nucleus 31.73 27.73
Bra031085.1-P Field mustard nucleus 32.21 26.59
Bra040678.1-P Field mustard nucleus 30.77 25.75
Bra036717.1-P Field mustard nucleus 29.09 25.21
Bra032295.1-P Field mustard cytosol 16.59 21.77
Bra010844.1-P Field mustard cytosol 16.59 21.77
Bra040681.1-P Field mustard cytosol 17.31 19.89
Bra031087.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 12.02 18.45
Protein Annotations
MapMan:12.2.1.3MapMan:12.3.3.1.1.1Gene3D:2.130.10.10EnsemblPlantsGene:Bra020379EnsemblPlants:Bra020379.1EnsemblPlants:Bra020379.1-P
InterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634InterPro:Histone-bd_RBBP4_NInterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
UniProt:M4DV36PFAM:PF00400PFAM:PF12265PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082
PFscan:PS50294PANTHER:PTHR22850PANTHER:PTHR22850:SF82SMART:SM00320SUPFAM:SSF50978UniParc:UPI0002543066
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sf:
Description
AT5G58230 (E=2e-165) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding
Coordinates
chrA02:-:6471146..6473360
Molecular Weight (calculated)
47167.2 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.520
Length
416 amino acids
Sequence
(BLAST)
001: MARDDEETQE EIKERLINEE YKTWKRNTPF LYDLVISHLL EWPSLTVEWL PDREEPSGKN YSVQKMILGT HTHVNEANYL MLAQVQLPLA DAEYNDERAK
101: FGSATGKVQV IKKINHEGEM NRARYMPQNP FMIATKTVRG EVYVFDYSKH PSKPALDGAC NPDLRLRGHS SEGYGLSWST LKQGHLLSGA NDAQICLWDI
201: NASPKNKTLD AHQIFKAHEG AVEDVAWHLR HEYLFGSVGE DQYFFIWDLR SPSASKPVQS VAAHSREVNC LAFNPLNEWI VATGSTDKTV KVFDLRRLSS
301: ALHSLDGHIE EVFQVGWSPK NESIVASSCL GRRIMVWDIN KIDEEQTAEA AEDGPPELLF THGGHTARIS DFSWNPCDDW VISSVCEDNI LQIWQMAETI
401: YHGEDDAPGE EPLRGS
Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.