Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY32715 | Canola | nucleus | 99.76 | 99.76 |
AT5G58230.1 | Thale cress | nucleus | 81.73 | 80.19 |
VIT_16s0013g01550.t01 | Wine grape | nucleus | 78.61 | 77.12 |
PGSC0003DMT400061016 | Potato | cytosol | 78.37 | 76.89 |
Solyc01g104510.2.1 | Tomato | nucleus | 77.88 | 76.42 |
GSMUA_Achr4P31680_001 | Banana | nucleus | 76.44 | 75.18 |
KRH42369 | Soybean | nucleus | 76.68 | 75.06 |
KRH58491 | Soybean | nucleus | 76.44 | 74.82 |
Bra002667.1-P | Field mustard | nucleus | 75.72 | 73.94 |
TraesCS5D01G385600.1 | Wheat | nucleus | 75.24 | 73.13 |
Os03t0640100-01 | Rice | cytosol | 75.24 | 73.13 |
TraesCS5B01G378700.1 | Wheat | nucleus | 75.0 | 72.9 |
TraesCSU01G072700.1 | Wheat | nucleus | 74.76 | 72.66 |
TraesCS5D01G385800.1 | Wheat | cytosol | 38.94 | 72.65 |
Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 74.76 | 72.16 |
Zm00001d033247_P001 | Maize | nucleus | 74.52 | 71.93 |
Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 19.95 | 70.94 |
Zm00001d013702_P001 | Maize | nucleus | 72.12 | 69.61 |
GSMUA_Achr5P02390_001 | Banana | cytosol | 67.31 | 66.67 |
OQU91278 | Sorghum | cytosol, nucleus, plastid | 75.0 | 51.32 |
Bra037289.1-P | Field mustard | cytosol | 50.0 | 50.36 |
Bra001997.1-P | Field mustard | nucleus | 50.48 | 50.24 |
Bra011133.1-P | Field mustard | nucleus | 31.73 | 27.73 |
Bra031085.1-P | Field mustard | nucleus | 32.21 | 26.59 |
Bra040678.1-P | Field mustard | nucleus | 30.77 | 25.75 |
Bra036717.1-P | Field mustard | nucleus | 29.09 | 25.21 |
Bra032295.1-P | Field mustard | cytosol | 16.59 | 21.77 |
Bra010844.1-P | Field mustard | cytosol | 16.59 | 21.77 |
Bra040681.1-P | Field mustard | cytosol | 17.31 | 19.89 |
Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.02 | 18.45 |
Protein Annotations
MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra020379 | EnsemblPlants:Bra020379.1 | EnsemblPlants:Bra020379.1-P |
InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
UniProt:M4DV36 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002543066 |
InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
AT5G58230 (E=2e-165) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding
Coordinates
chrA02:-:6471146..6473360
Molecular Weight (calculated)
47167.2 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.520
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDDEETQE EIKERLINEE YKTWKRNTPF LYDLVISHLL EWPSLTVEWL PDREEPSGKN YSVQKMILGT HTHVNEANYL MLAQVQLPLA DAEYNDERAK
101: FGSATGKVQV IKKINHEGEM NRARYMPQNP FMIATKTVRG EVYVFDYSKH PSKPALDGAC NPDLRLRGHS SEGYGLSWST LKQGHLLSGA NDAQICLWDI
201: NASPKNKTLD AHQIFKAHEG AVEDVAWHLR HEYLFGSVGE DQYFFIWDLR SPSASKPVQS VAAHSREVNC LAFNPLNEWI VATGSTDKTV KVFDLRRLSS
301: ALHSLDGHIE EVFQVGWSPK NESIVASSCL GRRIMVWDIN KIDEEQTAEA AEDGPPELLF THGGHTARIS DFSWNPCDDW VISSVCEDNI LQIWQMAETI
401: YHGEDDAPGE EPLRGS
101: FGSATGKVQV IKKINHEGEM NRARYMPQNP FMIATKTVRG EVYVFDYSKH PSKPALDGAC NPDLRLRGHS SEGYGLSWST LKQGHLLSGA NDAQICLWDI
201: NASPKNKTLD AHQIFKAHEG AVEDVAWHLR HEYLFGSVGE DQYFFIWDLR SPSASKPVQS VAAHSREVNC LAFNPLNEWI VATGSTDKTV KVFDLRRLSS
301: ALHSLDGHIE EVFQVGWSPK NESIVASSCL GRRIMVWDIN KIDEEQTAEA AEDGPPELLF THGGHTARIS DFSWNPCDDW VISSVCEDNI LQIWQMAETI
401: YHGEDDAPGE EPLRGS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.