Factsheet for Bra037289.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47479	Canola	cytosol	99.52	99.28
Bra001997.1-P	Field mustard	nucleus	93.7	92.58
AT2G16780.1	Thale cress	cytosol	89.83	89.4
VIT_03s0038g02430.t01	Wine grape	cytosol	68.77	70.82
Solyc01g111590.2.1	Tomato	cytosol	67.8	69.48
PGSC0003DMT400015787	Potato	cytosol	67.07	68.73
KRH24317	Soybean	nucleus	65.38	67.33
KRH29002	Soybean	nucleus	64.89	66.5
GSMUA_Achr1P26410_001	Banana	nucleus	57.87	58.72
GSMUA_Achr8P33950_001	Banana	nucleus	57.38	58.66
HORVU2Hr1G092350.1	Barley	cytosol	19.61	58.27
EER97107	Sorghum	cytosol	52.3	53.6
TraesCS5D01G337800.1	Wheat	cytosol	51.82	52.97
TraesCS5A01G331900.1	Wheat	cytosol	51.82	52.84
Os09t0540600-01	Rice	cytosol	52.3	52.68
Zm00001d022614_P001	Maize	cytosol	51.33	52.61
TraesCS5B01G332200.1	Wheat	cytosol	51.82	52.45
Bra002667.1-P	Field mustard	nucleus	53.75	52.11
Bra020379.1-P	Field mustard	cytosol	50.36	50.0
HORVU5Hr1G084160.2	Barley	cytosol	48.67	47.97
Bra011133.1-P	Field mustard	nucleus	32.2	27.94
Bra031085.1-P	Field mustard	nucleus	32.45	26.59
Bra040678.1-P	Field mustard	nucleus	31.96	26.56
Bra036717.1-P	Field mustard	nucleus	30.75	26.46
Bra032295.1-P	Field mustard	cytosol	17.43	22.71
Bra010844.1-P	Field mustard	cytosol	17.19	22.4
Bra040681.1-P	Field mustard	cytosol	17.43	19.89
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.59	19.19

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra037289	EnsemblPlants:Bra037289.1	EnsemblPlants:Bra037289.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4F878
PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002541D92	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT2G16780 (E=1e-225) MSI2, MSI02, NFC02, NFC2 | MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)

Coordinates

chrA09:-:4505506..4507390

Molecular Weight (calculated)

46491.2 Da

IEP (calculated)

4.301

GRAVY (calculated)

-0.496

Length

413 amino acids

Sequence
(BLAST)

001: MAEEGKEDAG MDQVEEDFSI WKKNTPFLYD LMISNPLEWP SLTVHWVPSP PSPYAADPHF GVHKLILGTH TSGDAQDFLM VADAVIPTPD AEPGLGGTNQ
101: DPIVPKVEIR QKIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA SKPQTSDCDP DLRLVGHDME GYGLSWSPFK EGYLLSGSQD KKICLWDVSA
201: TPQDKVLNAM FVYEGHECAV EDVAWHMKNE NLFGSAGDDG RLVIWDTRTN QMQHQVKVHE KEVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNVPLHVL
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EDEDEIEEDI KQS

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.