Factsheet for Zm00001d022614_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009745_P023
Zm00001d039165_P046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	Zm00001d009745_P023	AT4G05420.1	18223036
AT4G35050.1	Zm00001d039165_P046	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97107	Sorghum	cytosol	94.04	94.04
TraesCS5A01G331900.1	Wheat	cytosol	79.9	79.51
Os09t0540600-01	Rice	cytosol	80.15	78.78
TraesCS5D01G337800.1	Wheat	cytosol	78.91	78.71
TraesCS5B01G332200.1	Wheat	cytosol	79.4	78.43
HORVU2Hr1G092350.1	Barley	cytosol	26.8	77.7
HORVU5Hr1G084160.2	Barley	cytosol	75.19	72.31
GSMUA_Achr8P33950_001	Banana	nucleus	62.78	62.62
GSMUA_Achr1P26410_001	Banana	nucleus	61.54	60.93
VIT_03s0038g02430.t01	Wine grape	cytosol	55.58	55.86
PGSC0003DMT400015787	Potato	cytosol	54.84	54.84
Solyc01g111590.2.1	Tomato	cytosol	54.59	54.59
KRH29002	Soybean	nucleus	53.6	53.6
KRH24317	Soybean	nucleus	52.61	52.87
Zm00001d033252_P001	Maize	cytosol, nucleus, plastid	15.14	52.14
Bra037289.1-P	Field mustard	cytosol	52.61	51.33
CDY47479	Canola	cytosol	52.61	51.21
CDY26787	Canola	cytosol	52.61	51.21
Bra001997.1-P	Field mustard	nucleus	51.86	50.0
AT2G16780.1	Thale cress	cytosol	51.12	49.64
Zm00001d033248_P002	Maize	cytoskeleton, cytosol, nucleus	52.61	49.19
Zm00001d033247_P001	Maize	nucleus	52.36	48.96
AT4G35050.1	Thale cress	cytosol	51.12	48.58
Zm00001d013702_P001	Maize	nucleus	51.12	47.8
CDY70131	Canola	cytosol	23.08	44.5
Zm00001d016170_P001	Maize	cytosol	18.86	23.82
Zm00001d011705_P002	Maize	cytosol	30.52	23.65
Zm00001d043682_P002	Maize	cytosol, plastid	29.28	22.31
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	26.05	21.97
Zm00001d043683_P001	Maize	cytosol	11.17	21.84
Zm00001d010850_P003	Maize	plasma membrane	26.05	21.83
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	11.91	20.87
Zm00001d050047_P001	Maize	nucleus	11.41	16.67
Zm00001d052871_P001	Maize	cytosol	0.74	10.0

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:542084	UniProt:B4FZY9	EMBL:BT042677	EMBL:EU961955
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
ProteinID:ONM61224.1	ProteinID:ONM61226.1	PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00017B766B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d022614	EnsemblPlants:Zm00001d022614_P001	EnsemblPlants:Zm00001d022614_T001	SEG:seg	:	:

Description

nucleosome/chromatin assembly factor 104

Coordinates

chr7:-:181107203..181114528

Molecular Weight (calculated)

44341.8 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.306

Length

403 amino acids

Sequence
(BLAST)

001: MDGGSSTPAS PPPTVSASAA NMEEYRNWKK NAAVLYDLVI SHPLEWPSLT VQWLPSESSA RSHRLVVGTH TSDEAPNNLM VLDAVLPLPP RLAAAVAASG
101: GAVPFPSVSV SRVAPHRGEV NRARCMPQRP YTVATKTCVD EVHVYHLGDD DGSGKSGAEV VLKGHEAEGY GLSWSPMKEG WLLSGSYDKK ICLWDISSGS
201: GAPVLDAQQV FVAHEDLVED VAWHLKDEHI FGSVGDDCKL MMWDLRTNKP EQSILAHRKE VNSLSFNPFN EWILATASGD TTINLFDMRK LSRSLHTFDS
301: HEAEVFQVEW NPNLATVLAS SAADKRVMIW DINRIGDEQS EEDADDGPPE LLFVHGGHTD KISELSWNPS EKWAIASVSE DNILQIWEMA ESIYCDDLSM
401: QVN

Best Arabidopsis Sequence Match ( AT4G35050.1 )
(BLAST)

001: MAAEEGKDEA GLDQVEEEFS IWKRNTPFLY DLMISHPLEW PSLTLHWVPS TPIPYSKDPY FAVHKLILGT HTSGGAQDFL MVADVVIPTP DAEPGLGGRD
101: QEPIVPKVEI KQKIRVDGEV NRARCMPQKP TLVGAKTSGS EVFLFDYARL SGKPQTSECD PDLRLMGHEQ EGYGLAWSSF KEGYLLSGSQ DQRICLWDVS
201: ATATDKVLNP MHVYEGHQSI IEDVAWHMKN ENIFGSAGDD CQLVIWDLRT NQMQHQVKVH EREINYLSFN PFNEWVLATA SSDSTVALFD LRKLTAPLHV
301: LSKHEGEVFQ VEWDPNHETV LASSGEDRRL MVWDINRVGD EQLEIELDAE DGPPELLFSH GGHKAKISDF AWNKDEPWVI SSVAEDNSLQ VWQMAESIYR
401: EDDEDEDDDD EGNQNAQHSN ENQK

Arabidopsis Description

MSI3At4g35050 [Source:UniProtKB/TrEMBL;Acc:Q5HZ33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.