Factsheet for VIT_03s0038g02430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	VIT_10s0003g04360.t01	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111590.2.1	Tomato	cytosol	73.32	72.95
PGSC0003DMT400015787	Potato	cytosol	72.82	72.46
KRH24317	Soybean	nucleus	70.07	70.07
KRH29002	Soybean	nucleus	70.07	69.73
CDY47479	Canola	cytosol	71.07	68.84
Bra037289.1-P	Field mustard	cytosol	70.82	68.77
CDY26787	Canola	cytosol	70.57	68.36
Bra001997.1-P	Field mustard	nucleus	70.32	67.46
AT2G16780.1	Thale cress	cytosol	69.58	67.23
AT4G35050.1	Thale cress	cytosol	68.33	64.62
HORVU2Hr1G092350.1	Barley	cytosol	21.45	61.87
CDY70131	Canola	cytosol	32.17	61.72
GSMUA_Achr1P26410_001	Banana	nucleus	61.6	60.69
GSMUA_Achr8P33950_001	Banana	nucleus	60.85	60.4
EER97107	Sorghum	cytosol	56.86	56.58
Os09t0540600-01	Rice	cytosol	57.36	56.1
TraesCS5D01G337800.1	Wheat	cytosol	56.11	55.69
Zm00001d022614_P001	Maize	cytosol	55.86	55.58
TraesCS5A01G331900.1	Wheat	cytosol	55.86	55.31
TraesCS5B01G332200.1	Wheat	cytosol	55.86	54.9
VIT_16s0013g01550.t01	Wine grape	nucleus	57.86	54.72
HORVU5Hr1G084160.2	Barley	cytosol	53.37	51.07
VIT_09s0002g02150.t01	Wine grape	nucleus	34.41	30.46
VIT_11s0016g02170.t01	Wine grape	nucleus	33.17	26.18
VIT_11s0016g02270.t01	Wine grape	nucleus	24.94	21.1
VIT_10s0003g01320.t01	Wine grape	cytosol	17.96	18.46

Protein Annotations

EntrezGene:100265787	wikigene:100265787	MapMan:12.2.1.3	Gene3D:2.130.10.10	ProteinID:CBI37870	ProteinID:CBI37870.3
UniProt:D7U551	EMBL:FN596508	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100265787	wikigene:LOC100265787	PFAM:PF00400	PFAM:PF12265
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137
SMART:SM00320	SUPFAM:SSF50978	TIGR:TC57076	TIGR:TC61271	UniParc:UPI00015C8395	ArrayExpress:VIT_03s0038g02430
EnsemblPlantsGene:VIT_03s0038g02430	EnsemblPlants:VIT_03s0038g02430.t01	unigene:Vvi.1358	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002278931	RefSeq:XP_002278931.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:1684376..1690413

Molecular Weight (calculated)

45129.8 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.446

Length

401 amino acids

Sequence
(BLAST)

001: MGEEEMSVEQ VEEEFTVWKK NTPFLYDLII SHPLEWPSLT VQFLPSPPLP YALDSFSVHK LVLGTHTSDG FPNYLMVADA FLPRNTAAPS EQNPTIPKVE
101: ITKKIHVDGE VNRARCMPQN PDMVAAKTSG LEVYVFNCQK PPVGGEGRSC NPDLRLRGHE KEGYGLSWSS FKGGYVLSGS NDCKVCLWDV SASAEDKVLG
201: AMHVYEAHEN VVEDVSWHLK NENLFGSVGD DCRLMIWDLR LDKPQHSVIV HEKEVNFLSF NPYNEWILAT ASSDTTVGLF DMRKLNSPLH VLSSHTEEVF
301: QVEWDPNHET VLASSADDRR LMVWDLNRIG EEQLEGDAAD GPPELLFSHG GHKAKISDFS WNKNEPWVIS SVAEDNTLQI WKMTEGIYRD EDGTQTADDH
401: S

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.