Factsheet for GSMUA_Achr8P33950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P07200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	GSMUA_Achr8P07200_001	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26410_001	Banana	nucleus	85.4	84.77
HORVU2Hr1G092350.1	Barley	cytosol	22.77	66.19
Os09t0540600-01	Rice	cytosol	65.1	64.15
EER97107	Sorghum	cytosol	63.86	64.02
TraesCS5A01G331900.1	Wheat	cytosol	63.37	63.21
Zm00001d022614_P001	Maize	cytosol	62.62	62.78
TraesCS5D01G337800.1	Wheat	cytosol	62.62	62.62
TraesCS5B01G332200.1	Wheat	cytosol	63.12	62.5
VIT_03s0038g02430.t01	Wine grape	cytosol	60.4	60.85
PGSC0003DMT400015787	Potato	cytosol	60.64	60.79
Solyc01g111590.2.1	Tomato	cytosol	60.15	60.3
KRH29002	Soybean	nucleus	58.91	59.06
KRH24317	Soybean	nucleus	57.92	58.35
HORVU5Hr1G084160.2	Barley	cytosol	59.9	57.76
Bra037289.1-P	Field mustard	cytosol	58.66	57.38
AT2G16780.1	Thale cress	cytosol	58.91	57.35
CDY47479	Canola	cytosol	58.66	57.25
CDY26787	Canola	cytosol	58.42	57.0
Bra001997.1-P	Field mustard	nucleus	57.92	55.98
AT4G35050.1	Thale cress	cytosol	58.42	55.66
GSMUA_Achr4P31680_001	Banana	nucleus	57.92	55.32
GSMUA_Achr5P02390_001	Banana	cytosol	55.94	53.81
CDY70131	Canola	cytosol	26.49	51.2
GSMUA_Achr4P08720_001	Banana	cytosol	29.21	28.99
GSMUA_Achr7P09120_001	Banana	nucleus	30.94	27.47
GSMUA_Achr6P14510_001	Banana	cytosol, mitochondrion, peroxisome, plastid	21.53	27.36
GSMUA_Achr3P32330_001	Banana	cytosol	11.39	25.56
GSMUA_Achr10P...	Banana	mitochondrion	19.31	24.38
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	28.22	24.36
GSMUA_Achr7P24160_001	Banana	nucleus	14.11	23.75

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr8G33950_001	EnsemblPlants:GSMUA_Achr8P33950_001
EnsemblPlants:GSMUA_Achr8T33950_001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TVZ7
PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295A7BC	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

WD-40 repeat-containing protein MSI1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G33950_001]

Coordinates

chr8:+:34860775..34868665

Molecular Weight (calculated)

44881.4 Da

IEP (calculated)

4.496

GRAVY (calculated)

-0.396

Length

404 amino acids

Sequence
(BLAST)

001: MEEVERGEEG AAMEAEEYRV WKKNTPFLYD LVISHALEWP SLTVQWLPSS SSSSGGGGAS HRLLLGTHTS DEAPNFLMVV DVRFPLPPPP PSDAPIPKVE
101: ISQTIPHQGE VNRARFMPQG PSIVATKTCG AEVNVFDCSR RPTRPTEGEE TEPDVVLRGH ATEGYGVSWS PLKEGYLLSG SYDSKICLWD VGMPPRDKVL
201: DAKHVFEAHA AAVEDVAWHP KNENLFGSVG DDHLLMIWDL RSSASKKPQQ MVTAHQDEVN SLSFNPFNEW ILATASADTT IKLFDLRKLT TSLHTFSSHT
301: GAVLQVEWSP RQETVLASSA ADKRLMIWDL CRIGDEQTVE DADDGPPELL FVHGGHTSKI SEFSWNPAMP WVIASVAEDN ILQVWQMAES IYRDDCDTQN
401: DNDY

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.