Factsheet for HORVU5Hr1G084160.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT4G35050.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT4G35050.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT4G35050.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G331900.1	Wheat	cytosol	87.83	90.86
HORVU2Hr1G092350.1	Barley	cytosol	29.83	89.93
TraesCS5B01G332200.1	Wheat	cytosol	87.35	89.71
TraesCS5D01G337800.1	Wheat	cytosol	85.92	89.11
Os09t0540600-01	Rice	cytosol	76.13	77.8
EER97107	Sorghum	cytosol	73.99	76.92
Zm00001d022614_P001	Maize	cytosol	72.31	75.19
GSMUA_Achr8P33950_001	Banana	nucleus	57.76	59.9
GSMUA_Achr1P26410_001	Banana	nucleus	55.37	57.0
VIT_03s0038g02430.t01	Wine grape	cytosol	51.07	53.37
PGSC0003DMT400015787	Potato	cytosol	50.12	52.11
Solyc01g111590.2.1	Tomato	cytosol	49.64	51.61
KRH29002	Soybean	nucleus	48.93	50.87
KRH24317	Soybean	nucleus	47.97	50.12
Bra037289.1-P	Field mustard	cytosol	47.97	48.67
CDY47479	Canola	cytosol	47.97	48.55
CDY26787	Canola	cytosol	47.97	48.55
Bra001997.1-P	Field mustard	nucleus	47.02	47.13
AT2G16780.1	Thale cress	cytosol	46.3	46.75
AT4G35050.1	Thale cress	cytosol	46.3	45.75
CDY70131	Canola	cytosol	19.81	39.71
HORVU3Hr1G066930.1	Barley	plastid	27.45	22.59
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	24.11	20.95
HORVU3Hr1G082800.3	Barley	cytosol, mitochondrion	15.04	19.57

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A287S263	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU5Hr1G084160
EnsemblPlants:HORVU5Hr1G084160.2	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF12265	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B480725	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:571313628..571321435

Molecular Weight (calculated)

42819.9 Da

IEP (calculated)

4.620

GRAVY (calculated)

-0.253

Length

419 amino acids

Sequence
(BLAST)

001: MDGGSSFQAV AAAAAAADAE MEEYLNWKKN TPVLYDLVMS HPLEWPSLTV QWFPSGSPAA ARSHRLVLGT HASDDSPNHL MLVDAVLPLP PRLAAAAAAE
101: GRAVPAPSVS IGRSAPHQGE VNRARCMPQQ PYTVATKTCV DEVHVYHLGD DGEKRGADVV LRGHGAEGDG LAWSAGXXXX XXXXXXXXXX XXXXXXXXXX
201: XKICLWDLKA GNGAPVLDAQ QVFAAHEDVV EDVAWHLKDE NLFGSVGDDC KFMMWDLRTN KPEQSIVAHQ KEVNSLSFNP FNEWILATAS GDGTIKLFDL
301: RKLSRSLHAF HNHEGEVFQV EWNPNLETVL ASHAADKRVM IWDVSRIGEE QADEDAGDGP PELLFVHSGH TAKISELSWN PSEKWVVASV AEDNVLQIWE
401: VAENIYSDDS NGNASCLSA

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.