Factsheet for HORVU2Hr1G092350.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G094530.1
HORVU3Hr1G050820.11
HORVU7Hr1G056610.1
HORVU7Hr1G056620.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35050.1	HORVU1Hr1G094530.1	AT4G05420.1	18223036
AT4G35050.1	HORVU3Hr1G050820.11	AT4G05420.1	18223036
AT4G35050.1	HORVU7Hr1G056610.1	AT4G05420.1	18223036
AT4G35050.1	HORVU7Hr1G056620.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G331900.1	Wheat	cytosol	89.21	30.62
TraesCS5D01G337800.1	Wheat	cytosol	88.49	30.45
TraesCS5B01G332200.1	Wheat	cytosol	87.77	29.9
HORVU5Hr1G084160.2	Barley	cytosol	89.93	29.83
Os09t0540600-01	Rice	cytosol	82.01	27.8
EER97107	Sorghum	cytosol	79.14	27.3
Zm00001d022614_P001	Maize	cytosol	77.7	26.8
GSMUA_Achr8P33950_001	Banana	nucleus	66.19	22.77
GSMUA_Achr1P26410_001	Banana	nucleus	63.31	21.62
VIT_03s0038g02430.t01	Wine grape	cytosol	61.87	21.45
KRH29002	Soybean	nucleus	61.15	21.09
PGSC0003DMT400015787	Potato	cytosol	61.15	21.09
KRH24317	Soybean	nucleus	60.43	20.95
Solyc01g111590.2.1	Tomato	cytosol	58.99	20.35
Bra037289.1-P	Field mustard	cytosol	58.27	19.61
CDY47479	Canola	cytosol	58.27	19.57
CDY26787	Canola	cytosol	58.27	19.57
Bra001997.1-P	Field mustard	nucleus	57.55	19.14
AT4G35050.1	Thale cress	cytosol	56.12	18.4
AT2G16780.1	Thale cress	cytosol	54.68	18.31
CDY70131	Canola	cytosol	26.62	17.7
HORVU3Hr1G082800.3	Barley	cytosol, mitochondrion	23.02	9.94
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	30.94	8.92
HORVU3Hr1G066930.1	Barley	plastid	31.65	8.64

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A287IYC5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU2Hr1G092350	EnsemblPlants:HORVU2Hr1G092350.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B480DCE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:652463088..652464999

Molecular Weight (calculated)

14665.1 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.368

Length

139 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX GNVTRAHEDV VEDVAWHLKD ENLFGSVGDD CKFMMWDLRT NKPEQSIVAH QKEVNSLSFN PFNEWILATA SGDGTIKLFD LRKLSRSLHA
101: FHNHEGEVFQ VEWNPNLETV LASHAADKRV MIWDVSSCG

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.