Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G331900.1 | Wheat | cytosol | 96.32 | 97.04 |
TraesCS5D01G337800.1 | Wheat | cytosol | 93.38 | 94.31 |
HORVU2Hr1G092350.1 | Barley | cytosol | 29.9 | 87.77 |
HORVU5Hr1G084160.2 | Barley | cytosol | 89.71 | 87.35 |
Os09t0540600-01 | Rice | cytosol | 83.09 | 82.68 |
EER97107 | Sorghum | cytosol | 80.64 | 81.64 |
Zm00001d022614_P001 | Maize | cytosol | 78.43 | 79.4 |
GSMUA_Achr8P33950_001 | Banana | nucleus | 62.5 | 63.12 |
GSMUA_Achr1P26410_001 | Banana | nucleus | 60.05 | 60.2 |
PGSC0003DMT400015787 | Potato | cytosol | 55.39 | 56.08 |
VIT_03s0038g02430.t01 | Wine grape | cytosol | 54.9 | 55.86 |
Solyc01g111590.2.1 | Tomato | cytosol | 54.9 | 55.58 |
KRH29002 | Soybean | nucleus | 53.19 | 53.85 |
KRH24317 | Soybean | nucleus | 52.21 | 53.12 |
CDY26787 | Canola | cytosol | 52.7 | 51.93 |
Bra037289.1-P | Field mustard | cytosol | 52.45 | 51.82 |
CDY47479 | Canola | cytosol | 52.45 | 51.69 |
TraesCS5B01G378700.1 | Wheat | nucleus | 53.92 | 51.4 |
Bra001997.1-P | Field mustard | nucleus | 51.72 | 50.48 |
AT2G16780.1 | Thale cress | cytosol | 50.74 | 49.88 |
AT4G35050.1 | Thale cress | cytosol | 50.49 | 48.58 |
CDY70131 | Canola | cytosol | 23.53 | 45.93 |
TraesCS3B01G280400.1 | Wheat | nucleus | 29.17 | 25.27 |
TraesCS4B01G131200.1 | Wheat | nucleus | 25.74 | 21.78 |
TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 25.25 | 21.33 |
Protein Annotations
MapMan:12.2.1.3 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 |
PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF137 |
SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5B01G332200 | EnsemblPlants:TraesCS5B01G332200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:+:516093894..516099657
Molecular Weight (calculated)
44514.9 Da
IEP (calculated)
4.564
GRAVY (calculated)
-0.321
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGSGSSFQ AVAAAAAMEM EEYLNWKKNA PVLYDLVMSH PLEWPSLTVQ WLPSGSPASA RSHRLVLGTH ASDDSANHLM LVDAVLPLPP RLAAAAAAED
101: RAVPAPSVSI GRSAPHQGEV NRARCMPQRP YTVATKTCVD EVHVYHLGED GEKGGADVVL RGHGAEGYGL AWSATKEGFL LSGSYDKKIC LWDLKAGNGA
201: PVLDAQQVFE AHEDVVEDVA WHLKDENLFG SVGDDCKFMM WDLRTNKPEQ SIVAHQKEVN SLSFNPFNEW ILATASGDGT IKLFDQRKLS RSLHAFDNHE
301: GEVFQVEWNP NMETVLASHA ADKRVMIWDV SRIGEEQADE DAGDGPPELL FVHGGHTAKI SELSWNPSEK WVVASVAEDN VLQIWEMAES IYSDDNSNNA
401: NSASCLST
101: RAVPAPSVSI GRSAPHQGEV NRARCMPQRP YTVATKTCVD EVHVYHLGED GEKGGADVVL RGHGAEGYGL AWSATKEGFL LSGSYDKKIC LWDLKAGNGA
201: PVLDAQQVFE AHEDVVEDVA WHLKDENLFG SVGDDCKFMM WDLRTNKPEQ SIVAHQKEVN SLSFNPFNEW ILATASGDGT IKLFDQRKLS RSLHAFDNHE
301: GEVFQVEWNP NMETVLASHA ADKRVMIWDV SRIGEEQADE DAGDGPPELL FVHGGHTAKI SELSWNPSEK WVVASVAEDN VLQIWEMAES IYSDDNSNNA
401: NSASCLST
001: MAAEEGKDEA GLDQVEEEFS IWKRNTPFLY DLMISHPLEW PSLTLHWVPS TPIPYSKDPY FAVHKLILGT HTSGGAQDFL MVADVVIPTP DAEPGLGGRD
101: QEPIVPKVEI KQKIRVDGEV NRARCMPQKP TLVGAKTSGS EVFLFDYARL SGKPQTSECD PDLRLMGHEQ EGYGLAWSSF KEGYLLSGSQ DQRICLWDVS
201: ATATDKVLNP MHVYEGHQSI IEDVAWHMKN ENIFGSAGDD CQLVIWDLRT NQMQHQVKVH EREINYLSFN PFNEWVLATA SSDSTVALFD LRKLTAPLHV
301: LSKHEGEVFQ VEWDPNHETV LASSGEDRRL MVWDINRVGD EQLEIELDAE DGPPELLFSH GGHKAKISDF AWNKDEPWVI SSVAEDNSLQ VWQMAESIYR
401: EDDEDEDDDD EGNQNAQHSN ENQK
101: QEPIVPKVEI KQKIRVDGEV NRARCMPQKP TLVGAKTSGS EVFLFDYARL SGKPQTSECD PDLRLMGHEQ EGYGLAWSSF KEGYLLSGSQ DQRICLWDVS
201: ATATDKVLNP MHVYEGHQSI IEDVAWHMKN ENIFGSAGDD CQLVIWDLRT NQMQHQVKVH EREINYLSFN PFNEWVLATA SSDSTVALFD LRKLTAPLHV
301: LSKHEGEVFQ VEWDPNHETV LASSGEDRRL MVWDINRVGD EQLEIELDAE DGPPELLFSH GGHKAKISDF AWNKDEPWVI SSVAEDNSLQ VWQMAESIYR
401: EDDEDEDDDD EGNQNAQHSN ENQK
Arabidopsis Description
MSI3At4g35050 [Source:UniProtKB/TrEMBL;Acc:Q5HZ33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.