Factsheet for Bra001997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037289.1-P	Field mustard	cytosol	92.58	93.7
CDY70131	Canola	cytosol	46.17	92.34
AT2G16780.1	Thale cress	cytosol	89.23	89.88
VIT_03s0038g02430.t01	Wine grape	cytosol	67.46	70.32
Solyc01g111590.2.1	Tomato	cytosol	66.51	68.98
PGSC0003DMT400015787	Potato	cytosol	65.79	68.24
KRH24317	Soybean	nucleus	65.31	68.08
KRH29002	Soybean	nucleus	64.83	67.25
GSMUA_Achr1P26410_001	Banana	nucleus	56.94	58.48
GSMUA_Achr8P33950_001	Banana	nucleus	55.98	57.92
HORVU2Hr1G092350.1	Barley	cytosol	19.14	57.55
EER97107	Sorghum	cytosol	50.72	52.61
Os09t0540600-01	Rice	cytosol	51.44	52.44
TraesCS5A01G331900.1	Wheat	cytosol	50.48	52.1
TraesCS5D01G337800.1	Wheat	cytosol	50.24	51.98
Bra002667.1-P	Field mustard	nucleus	52.87	51.88
Zm00001d022614_P001	Maize	cytosol	50.0	51.86
TraesCS5B01G332200.1	Wheat	cytosol	50.48	51.72
Bra020379.1-P	Field mustard	cytosol	50.24	50.48
HORVU5Hr1G084160.2	Barley	cytosol	47.13	47.02
Bra011133.1-P	Field mustard	nucleus	30.86	27.1
Bra031085.1-P	Field mustard	nucleus	31.34	25.99
Bra040678.1-P	Field mustard	nucleus	30.86	25.96
Bra036717.1-P	Field mustard	nucleus	29.67	25.83
Bra032295.1-P	Field mustard	cytosol	16.51	21.77
Bra010844.1-P	Field mustard	cytosol	16.51	21.77
Bra040681.1-P	Field mustard	cytosol	16.99	19.61
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.96	18.45

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra001997	EnsemblPlants:Bra001997.1	EnsemblPlants:Bra001997.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4CCR6
PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025442D9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT2G16780 (E=5e-228) MSI2, MSI02, NFC02, NFC2 | MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)

Coordinates

chrA10:+:12384072..12386170

Molecular Weight (calculated)

47280.1 Da

IEP (calculated)

4.375

GRAVY (calculated)

-0.561

Length

418 amino acids

Sequence
(BLAST)

001: MADEGKEEQG MDQVEEDFSI WKKNTPFLYD LMISNPLEWP SLTVHWVPSA PTPYAADPYF NVHKLILGTH TSGGAQDFLM IADAVIPTPD AEPGLGGTNQ
101: DPIVPKVEIR QKIRVDGEVN RARCMPQRPT LVGAKTSGCE VFLFDFTKHA SKPQTSDCDP DLRLLGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKKLNAM FVYEGHECAV EDVSWHMKNE YLFGSAGDDG RLVIWDTRTN KMQHHVKVHE KEVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNVPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EDEAENDEEI KQDTTQQS

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.