Factsheet for Bra040678.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036717.1-P	Field mustard	nucleus	91.15	94.38
Bra031085.1-P	Field mustard	nucleus	95.57	94.25
CDY29763	Canola	endoplasmic reticulum	63.38	93.47
AT2G19520.1	Thale cress	nucleus	93.36	91.52
CDX82696	Canola	nucleus	78.87	89.09
CDY35867	Canola	cytosol	50.3	88.03
GSMUA_Achr4P08720_001	Banana	cytosol	64.59	78.87
KRH12388	Soybean	nucleus	80.28	78.54
KRH37388	Soybean	nucleus	80.48	77.97
EES01357	Sorghum	nucleus	70.83	77.7
Os01t0710000-01	Rice	nucleus	69.82	76.6
Bra011133.1-P	Field mustard	nucleus	72.43	75.63
TraesCS3B01G280400.1	Wheat	nucleus	71.43	75.37
TraesCS3A01G250900.2	Wheat	cytosol	71.43	75.37
TraesCS3D01G251300.2	Wheat	nucleus	71.23	75.16
Zm00001d052871_P001	Maize	cytosol	4.43	73.33
VIT_11s0016g02170.t01	Wine grape	nucleus	74.04	72.44
HORVU3Hr1G066930.1	Barley	plastid	72.84	71.12
Zm00001d043683_P001	Maize	cytosol	29.18	70.39
Solyc07g039330.2.1	Tomato	nucleus	52.52	69.23
Zm00001d011705_P002	Maize	cytosol	69.62	66.54
GSMUA_Achr3P32330_001	Banana	cytosol	23.94	66.11
Zm00001d043682_P002	Maize	cytosol, plastid	69.62	65.41
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	28.37	61.3
GSMUA_Achr7P09120_001	Banana	nucleus	54.12	59.12
GSMUA_Achr7P24160_001	Banana	nucleus	27.97	57.92
Zm00001d050047_P001	Maize	nucleus	22.13	39.86
Bra002667.1-P	Field mustard	nucleus	27.77	32.39
Bra037289.1-P	Field mustard	cytosol	26.56	31.96
Bra001997.1-P	Field mustard	nucleus	25.96	30.86
Bra020379.1-P	Field mustard	cytosol	25.75	30.77
Bra040681.1-P	Field mustard	cytosol	15.69	21.55
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.47	21.03
Bra010844.1-P	Field mustard	cytosol	13.28	20.82
Bra032295.1-P	Field mustard	cytosol	13.08	20.5

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra040678	EnsemblPlants:Bra040678.1	EnsemblPlants:Bra040678.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FHU9	PFAM:PF00400
PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000253E76B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

AT2G19520 (E=2e-267) FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | FVE; metal ion binding

Coordinates

chrScaffold000232:+:45882..48852

Molecular Weight (calculated)

54650.7 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.557

Length

497 amino acids

Sequence
(BLAST)

001: MESDEAAAAS PQGSGGTVTP APKKRGRKPK IKEDSQTKEQ SGKESGGKKT KQSVDEKYTQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL DQATYKNRQR
101: LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKII ATHTDSPDVL IWDVETQPNR HAVLGAATSR
201: PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTVGTDS KSSGSIIKQT GEGGDKTESP SVAPRGVYHG HDDTVEDVAF SPTSAQEFCS
301: VGDDSCLILW DARTGTSPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLYDRRNL TSNGVGTPIY KFEGHRAAVL CVQWCPDKSS VFGSSAEDGL
401: LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN AADPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVL AELETFKSHV MTCASKP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.