Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040678.1-P | Field mustard | nucleus | 91.52 | 93.36 |
| CDX81933 | Canola | nucleus | 88.56 | 92.77 |
| CDY48711 | Canola | nucleus | 91.72 | 92.45 |
| CDY03358 | Canola | nucleus | 91.72 | 92.26 |
| Bra036717.1-P | Field mustard | nucleus | 87.18 | 92.08 |
| Bra031085.1-P | Field mustard | nucleus | 91.12 | 91.67 |
| CDY21661 | Canola | nucleus | 90.93 | 91.11 |
| CDY29763 | Canola | endoplasmic reticulum | 59.96 | 90.21 |
| CDY70287 | Canola | nucleus | 31.76 | 87.98 |
| CDY35867 | Canola | cytosol | 47.34 | 84.51 |
| CDX82696 | Canola | nucleus | 73.18 | 84.32 |
| KRH12388 | Soybean | nucleus | 80.67 | 80.51 |
| GSMUA_Achr4P08720_001 | Banana | cytosol | 64.3 | 80.1 |
| KRH37388 | Soybean | nucleus | 80.67 | 79.73 |
| EES01357 | Sorghum | nucleus | 70.22 | 78.59 |
| AT4G29730.1 | Thale cress | nucleus | 74.36 | 77.41 |
| Os01t0710000-01 | Rice | nucleus | 68.44 | 76.6 |
| TraesCS3A01G250900.2 | Wheat | cytosol | 70.41 | 75.8 |
| TraesCS3B01G280400.1 | Wheat | nucleus | 70.41 | 75.8 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 70.22 | 75.58 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 72.98 | 72.83 |
| HORVU3Hr1G066930.1 | Barley | plastid | 71.6 | 71.32 |
| Zm00001d043683_P001 | Maize | cytosol | 28.6 | 70.39 |
| Zm00001d052871_P001 | Maize | cytosol | 4.14 | 70.0 |
| Solyc07g039330.2.1 | Tomato | nucleus | 51.68 | 69.5 |
| GSMUA_Achr3P32330_001 | Banana | cytosol | 23.67 | 66.67 |
| Zm00001d011705_P002 | Maize | cytosol | 68.24 | 66.54 |
| Zm00001d043682_P002 | Maize | cytosol, plastid | 68.44 | 65.6 |
| Zm00001d053451_P001 | Maize | cytosol, nucleus, plastid | 27.42 | 60.43 |
| GSMUA_Achr7P09120_001 | Banana | nucleus | 53.85 | 60.0 |
| GSMUA_Achr7P24160_001 | Banana | nucleus | 28.21 | 59.58 |
| Zm00001d050047_P001 | Maize | nucleus | 21.89 | 40.22 |
| AT5G58230.1 | Thale cress | nucleus | 27.81 | 33.25 |
| AT4G35050.1 | Thale cress | cytosol | 27.22 | 32.55 |
| AT2G16780.1 | Thale cress | cytosol | 26.23 | 32.05 |
| AT1G29260.1 | Thale cress | cytosol | 14.0 | 22.4 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 20.51 | 22.17 |
Protein Annotations
| MapMan:12.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:816471 | UniProt:A0A178VX04 | ProteinID:AAD10151.2 | ProteinID:AAP29474.1 |
| ProteinID:AAX51264.1 | ProteinID:AEC06891.1 | EMBL:AF028711 | EMBL:AF498102 | ArrayExpress:AT2G19520 | EnsemblPlantsGene:AT2G19520 |
| RefSeq:AT2G19520 | TAIR:AT2G19520 | RefSeq:AT2G19520-TAIR-G | EnsemblPlants:AT2G19520.1 | TAIR:AT2G19520.1 | EMBL:AY057655 |
| EMBL:AY059799 | EMBL:AY081447 | Symbol:FVE | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010224 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0030154 | GO:GO:0046872 | GO:GO:0080008 | InterPro:Histone-bd_RBBP4_N |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_565456.2 | UniProt:O22607 | ProteinID:OAP10890.1 |
| PFAM:PF00400 | PFAM:PF12265 | PO:PO:0000293 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF184 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000012F60F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EMBL:Z37286 | EMBL:Z37287 | SEG:seg | : |
Description
MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
Coordinates
chr2:+:8455756..8459642
Molecular Weight (calculated)
55761.9 Da
IEP (calculated)
6.169
GRAVY (calculated)
-0.595
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.