CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29763	Canola	endoplasmic reticulum	67.25	56.68
GSMUA_Achr7P24160_001	Banana	nucleus	42.96	50.83
CDX81933	Canola	nucleus	86.62	50.83
Bra040678.1-P	Field mustard	nucleus	88.03	50.3
CDY48711	Canola	nucleus	86.62	48.91
Solyc07g039330.2.1	Tomato	nucleus	64.79	48.81
CDY03358	Canola	nucleus	86.27	48.61
CDY21661	Canola	nucleus	85.92	48.22
GSMUA_Achr4P08720_001	Banana	cytosol	68.31	47.67
AT2G19520.1	Thale cress	nucleus	84.51	47.34
CDY06779	Canola	nucleus	72.54	42.47
CDY43523	Canola	nucleus	70.07	41.89
CDX82696	Canola	nucleus	63.73	41.14
KRH12388	Soybean	nucleus	72.89	40.75
KRH37388	Soybean	nucleus	73.24	40.55
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	32.39	40.0
EES01357	Sorghum	nucleus	63.38	39.74
Os01t0710000-01	Rice	nucleus	63.03	39.51
VIT_11s0016g02170.t01	Wine grape	nucleus	70.07	39.17
TraesCS3A01G250900.2	Wheat	cytosol	64.79	39.07
TraesCS3B01G280400.1	Wheat	nucleus	64.79	39.07
TraesCS3D01G251300.2	Wheat	nucleus	64.79	39.07
HORVU3Hr1G066930.1	Barley	plastid	64.44	35.95
Zm00001d011705_P002	Maize	cytosol	64.79	35.38
GSMUA_Achr7P09120_001	Banana	nucleus	52.11	32.53
Zm00001d043682_P002	Maize	cytosol, plastid	59.86	32.14
Zm00001d050047_P001	Maize	nucleus	25.35	26.09
CDY47479	Canola	cytosol	27.46	18.84
CDY26787	Canola	cytosol	27.46	18.84
CDY02805	Canola	nucleus	25.35	17.18
CDY43875	Canola	nucleus	25.7	17.14
CDY62688	Canola	nucleus	25.7	17.14
CDY70131	Canola	cytosol	12.32	16.75
CDY32715	Canola	nucleus	24.3	16.59
CDY35872	Canola	cytosol, nucleus, plastid	19.01	15.88
CDX90175	Canola	cytosol	16.9	15.14
CDY43325	Canola	cytosol	16.9	15.14
CDX99799	Canola	cytosol	16.55	14.83
CDY50786	Canola	cytosol	16.55	14.83
CDX81935	Canola	nucleus	22.18	13.26
CDY21659	Canola	nucleus	21.83	13.11
CDY48712	Canola	plastid	21.48	12.95
CDY03357	Canola	plastid	21.48	12.9
CDX82701	Canola	nucleus	16.9	12.37
CDX88663	Canola	nucleus	26.76	11.95
CDY58569	Canola	cytosol	26.76	11.95
Zm00001d052871_P001	Maize	cytosol	1.06	10.0
Zm00001d043683_P001	Maize	cytosol	3.17	4.37
GSMUA_Achr3P32330_001	Banana	cytosol	1.76	2.78
CDY70287	Canola	nucleus	1.41	2.19

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A078HDG7	EnsemblPlants:CDY35867	ProteinID:CDY35867	ProteinID:CDY35867.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00059404001	InterPro:IPR001680
InterPro:IPR015943	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEC19C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf

Description

BnaA07g01200DBnaA07g01200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDG7]

Coordinates

chrLK032363:+:102..9740

Molecular Weight (calculated)

30989.1 Da

IEP (calculated)

6.223

GRAVY (calculated)

-0.385

Length

284 amino acids

Sequence
(BLAST)

001: MCPTEPFVLS GGKDKSVVLW SIQDHITTVG TDSKSSGSII KQTGEGGDKT ESPSVGPRGV YHGHDDTVED VAFSPTSAQE FCSVGDDSCL ILWDARTGTS
101: PVTKVEKAHD ADLHCVDWNP HDDNLILTGS ADNTVRLYDR RNLTSNGVGT PIYKFEGHRA AVLCVQWCPD KSSVFGSSAE DGLLNIWDYD RVSKKSDRAA
201: KSPAGLFFQH AGHRDKVVDF HWNAADPWTI VSVSDDCETT GGGGTLQLVN KLAKGLRSKL SNPITKPYIH TYTYLVCHFL FKNI

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.