CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35872	Canola	cytosol, nucleus, plastid	68.3	77.94
CDY48712	Canola	plastid	87.89	72.4
CDY03357	Canola	plastid	87.63	71.88
CDY21659	Canola	nucleus	87.63	71.88
CDX81935	Canola	nucleus	87.37	71.37
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	82.99	68.66
Os12t0132400-01	Rice	nucleus	26.55	67.32
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	45.1	57.38
VIT_11s0016g02270.t01	Wine grape	nucleus	69.07	56.54
KRH58776	Soybean	nucleus	67.01	54.97
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	63.92	52.99
Solyc05g014090.1.1	Tomato	mitochondrion	54.12	52.9
PGSC0003DMT400034220	Potato	nucleus	63.4	52.45
KRH42676	Soybean	nucleus	66.24	52.02
Solyc07g039200.2.1	Tomato	nucleus	61.6	51.73
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	63.14	50.83
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	63.14	50.83
TraesCS4B01G131200.1	Wheat	nucleus	62.89	50.62
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	62.63	50.41
Os11t0134500-01	Rice	nucleus	60.05	50.11
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	59.79	48.43
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	59.54	48.33
Zm00001d010850_P003	Maize	plasma membrane	59.28	47.82
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	58.25	46.79
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.25	46.79
OQU82815	Sorghum	mitochondrion	55.15	46.62
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	54.38	45.57
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	43.56	44.59
CDY02805	Canola	nucleus	20.36	18.85
CDY62688	Canola	nucleus	20.36	18.54
CDY43875	Canola	nucleus	20.1	18.31
CDY70131	Canola	cytosol	9.79	18.18
CDY32715	Canola	nucleus	19.33	18.03
CDY26787	Canola	cytosol	19.07	17.87
CDY47479	Canola	cytosol	19.07	17.87
CDY29763	Canola	endoplasmic reticulum	15.46	17.8
CDX81933	Canola	nucleus	21.13	16.94
CDY35867	Canola	cytosol	12.37	16.9
CDY43523	Canola	nucleus	20.62	16.84
CDY48711	Canola	nucleus	21.39	16.5
CDY03358	Canola	nucleus	21.39	16.47
CDY21661	Canola	nucleus	21.39	16.4
CDY06779	Canola	nucleus	20.36	16.29
CDY70287	Canola	nucleus	7.22	15.3
CDX82696	Canola	nucleus	16.24	14.32
CDY58569	Canola	cytosol	20.88	12.74
CDX88663	Canola	nucleus	20.88	12.74
CDY43325	Canola	cytosol	10.31	12.62
CDX90175	Canola	cytosol	10.31	12.62
CDX99799	Canola	cytosol	9.79	11.99
CDY50786	Canola	cytosol	9.54	11.67
Os12t0132300-02	Rice	cytosol	1.03	2.19
Os11t0134400-00	Rice	cytosol	1.03	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX82701	ProteinID:CDX82701	ProteinID:CDX82701.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00137966001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EDB0B0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

BnaC07g01650D

Coordinates

chrLK031829:+:1382938..1385192

Molecular Weight (calculated)

43317.8 Da

IEP (calculated)

6.021

GRAVY (calculated)

-0.537

Length

388 amino acids

Sequence
(BLAST)

001: MDSTVNTKKV KRKNKKKGEA SSSYHRCKTR VWQPGDKLGL NRTEFPHTLY MVAGTQAEKA PWNSIGLFKI SNVSGKRRDV VPKTLVNGDG GMEDEDDEDE
101: YSDSDEESVR RVAHHGCVNR IRAMPQNPHI CVSWADYAHV QSETEGKDGT SPILNHAPLV NFSGHKDEGY AIDWSPATAG RLLSGDCMSM IHLWEPASGS
201: WTVDPIPLAR HTASVEDIQL NCVLTVTVSF WLNIISSSPG LSFKAHNADV NVISWNRLAS CMLLIKDGDK DKVAHFEYHK HPITSIEWSA HESSTLAVSS
301: GDNQLTIWDL SLEKDEEEEA EFKAQTKEQV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIVSTAADG FNILMRYNIQ NTLPDLAA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.