Factsheet for Solyc05g018780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	92.08	75.38
Solyc05g014090.1.1	Tomato	mitochondrion	74.41	71.03
Solyc05g014070.1.1	Tomato	cytosol, mitochondrion, nucleus	21.37	68.64
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	48.28	60.0
Solyc07g039200.2.1	Tomato	nucleus	69.92	57.36
VIT_11s0016g02270.t01	Wine grape	nucleus	69.66	55.7
KRH58776	Soybean	nucleus	68.6	54.97
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	67.02	54.27
KRH42676	Soybean	nucleus	68.07	52.23
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	63.59	51.39
CDY48712	Canola	plastid	63.85	51.38
CDY21659	Canola	nucleus	64.12	51.37
CDX81935	Canola	nucleus	64.38	51.37
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.68	51.29
CDY03357	Canola	plastid	63.85	51.16
CDY35872	Canola	cytosol, nucleus, plastid	43.8	48.82
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.16	47.3
TraesCS4B01G131200.1	Wheat	nucleus	60.16	47.3
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	60.16	47.3
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.16	47.3
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	59.63	47.18
Os11t0134500-01	Rice	nucleus	57.78	47.1
Zm00001d010850_P003	Maize	plasma membrane	59.1	46.57
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	58.58	46.44
Bra040681.1-P	Field mustard	cytosol	44.33	46.41
Os12t0132400-01	Rice	nucleus	18.73	46.41
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.58	45.96
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	58.31	45.76
OQU82815	Sorghum	mitochondrion	52.77	43.57
CDX82701	Canola	nucleus	44.59	43.56
Solyc01g104510.2.1	Tomato	nucleus	20.05	17.92
Solyc01g111590.2.1	Tomato	cytosol	18.21	17.12
Solyc03g121580.2.1	Tomato	nucleus	19.26	15.87
Solyc03g062940.2.1	Tomato	cytosol	13.19	15.82
Solyc07g039330.2.1	Tomato	nucleus	15.04	15.12
Solyc07g039320.2.1	Tomato	nucleus	4.22	10.53
Os12t0132300-02	Rice	cytosol	1.06	2.19
Os11t0134400-00	Rice	cytosol	1.06	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4BZD2	PFAM:PF00400	PFAM:PF12265	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc05g018780.1
EnsemblPlants:Solyc05g018780.1.1	UniParc:UPI000276740C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:23638518..23641489

Molecular Weight (calculated)

42298.4 Da

IEP (calculated)

4.998

GRAVY (calculated)

-0.549

Length

379 amino acids

Sequence
(BLAST)

001: MVRRLRKPQN AKRKNKSDLV ASKVWEAGVD KLEEGEELQC EPSAYNALHA FHIGWPCMSF DVLWDSLGMV RTEFSHTPYC VAGTQADKRA SNSIGIFKLS
101: NISGKRRDLV PTKTGDDDNM DSESCDNDDD NEEKEVEVVL QVWDFSSHLN ALAEAESDRS QGASAVSNHS PLFKFGEHKD EGYAIDWSPH IPGRLVSGDC
201: KNSIHLWEPT SDTTWNVEDP FIGHSASVED FQWSPVDPCV LASCSVDGSI KIWDTRKKRS PTATMKAHKT DVNVISWNRG ASCMLASGSD DGAFSIQDLR
301: VVKCGLNRDE EEQAEFKVKM KEQVNVPKDL PPQLLFIHQG HKDLKELQWH PQIPGMVIST AADGFNILMP SNIENFLPA

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.