Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 95.22 | 95.62 |
| Zm00001d044641_P004 | Maize | cytosol, mitochondrion, nucleus, plastid | 92.93 | 93.51 |
| Os11t0134500-01 | Rice | nucleus | 80.04 | 82.8 |
| Os12t0132400-01 | Rice | nucleus | 26.2 | 82.35 |
| TraesCS4B01G131200.1 | Wheat | nucleus | 81.29 | 81.12 |
| TraesCS4A01G187400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 81.29 | 81.12 |
| HORVU4Hr1G026330.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 81.08 | 80.91 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 80.87 | 80.71 |
| TraesCS5B01G137200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 75.88 | 75.57 |
| TraesCS5A01G139800.1 | Wheat | mitochondrion, plastid | 75.68 | 75.36 |
| GSMUA_Achr8P09420_001 | Banana | cytosol, nucleus, plastid | 70.27 | 72.22 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 67.98 | 68.99 |
| KRH58776 | Soybean | nucleus | 66.94 | 68.08 |
| PGSC0003DMT400065692 | Potato | cytoskeleton, cytosol, nucleus | 42.62 | 67.21 |
| PGSC0003DMT400034220 | Potato | nucleus | 64.45 | 66.1 |
| Solyc07g039200.2.1 | Tomato | nucleus | 62.37 | 64.94 |
| KRH42676 | Soybean | nucleus | 66.53 | 64.78 |
| AT2G19540.1 | Thale cress | cytosol, mitochondrion, nucleus | 62.16 | 63.75 |
| CDY48712 | Canola | plastid | 62.37 | 63.69 |
| CDY03357 | Canola | plastid | 62.37 | 63.42 |
| CDY21659 | Canola | nucleus | 61.95 | 63.0 |
| CDX81935 | Canola | nucleus | 62.16 | 62.95 |
| Bra031087.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 35.34 | 62.73 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 50.1 | 60.71 |
| Bra040681.1-P | Field mustard | cytosol | 45.32 | 60.22 |
| CDX82701 | Canola | nucleus | 47.82 | 59.28 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 46.57 | 59.1 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 56.76 | 58.96 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 40.54 | 57.35 |
| Zm00001d022614_P001 | Maize | cytosol | 21.83 | 26.05 |
| Zm00001d013702_P001 | Maize | nucleus | 22.25 | 24.83 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 22.25 | 24.83 |
| Zm00001d033247_P001 | Maize | nucleus | 21.83 | 24.36 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 5.61 | 23.08 |
| Zm00001d016170_P001 | Maize | cytosol | 14.55 | 21.94 |
| Zm00001d053451_P001 | Maize | cytosol, nucleus, plastid | 10.39 | 21.74 |
| Zm00001d011705_P002 | Maize | cytosol | 22.45 | 20.77 |
| Zm00001d043683_P001 | Maize | cytosol | 8.73 | 20.39 |
| Zm00001d043682_P002 | Maize | cytosol, plastid | 21.21 | 19.28 |
| Zm00001d050047_P001 | Maize | nucleus | 8.52 | 14.86 |
| Zm00001d052871_P001 | Maize | cytosol | 0.21 | 3.33 |
| Os12t0132300-02 | Rice | cytosol | 1.25 | 3.28 |
| Os11t0134400-00 | Rice | cytosol | 1.25 | 3.28 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | ProteinID:AQK95085.1 | UniProt:B4FLB4 | EMBL:BT037902 | EMBL:EU969462 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| PFAM:PF12265 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF6 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00017B6AB9 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| EnsemblPlantsGene:Zm00001d010850 | EnsemblPlants:Zm00001d010850_P003 | EnsemblPlants:Zm00001d010850_T003 | SEG:seg | : | : |
Description
Transducin family protein / WD-40 repeat family protein
Coordinates
chr8:+:130351343..130365339
Molecular Weight (calculated)
52975.6 Da
IEP (calculated)
4.943
GRAVY (calculated)
-0.476
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRTIKKAKK AQSKKSKKKT ESSSSSNPAI ASGPAKVWQP GVDTLEDGEE LQFDPQAYNY LRGFGIGWSC LSFDVVRDQL GLVRSEFPHT FYGVAGTQAE
101: KASWNYIGVF KLSNISGKKR EPIPASAVEA DTDVDSDSSS DEEDEEINED TKPILHLKKV AHAGCVNRIR SMTQKPHISA TWGDTGHVQV WDLSSFLNSL
201: AESGTAAPKE DDIIHKHLPL KVFSGHKDEG YAIDWSPLVT GRLVSGDCNK CIHLWEPTSN NWNVDANPFV GHSASVEDLQ WSPTEADIFA SCSVDGTISI
301: WDIRTGKKPC ISVKAHEADV NVISWNKLAS CMIASGCDDG SFSVRDLRSI EEDSLVAHFE YHKKAITSIE WSPHEASSLA VTSEDHQLTI WDLSLERDAE
401: EEAEFRAKMK EQANAPEDLP PQLLFAHQGQ RDLKELHWHP QIPSMIISTA IDGFNVLMPS NIDTTIPGST DAAMPSAEPQ H
101: KASWNYIGVF KLSNISGKKR EPIPASAVEA DTDVDSDSSS DEEDEEINED TKPILHLKKV AHAGCVNRIR SMTQKPHISA TWGDTGHVQV WDLSSFLNSL
201: AESGTAAPKE DDIIHKHLPL KVFSGHKDEG YAIDWSPLVT GRLVSGDCNK CIHLWEPTSN NWNVDANPFV GHSASVEDLQ WSPTEADIFA SCSVDGTISI
301: WDIRTGKKPC ISVKAHEADV NVISWNKLAS CMIASGCDDG SFSVRDLRSI EEDSLVAHFE YHKKAITSIE WSPHEASSLA VTSEDHQLTI WDLSLERDAE
401: EEAEFRAKMK EQANAPEDLP PQLLFAHQGQ RDLKELHWHP QIPSMIISTA IDGFNVLMPS NIDTTIPGST DAAMPSAEPQ H
001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA
Arabidopsis Description
Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.