CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42676	Soybean	nucleus	96.83	92.71
VIT_11s0016g02270.t01	Wine grape	nucleus	81.61	81.43
Os12t0132400-01	Rice	nucleus	24.52	75.82
PGSC0003DMT400034220	Potato	nucleus	74.84	75.48
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	48.41	75.08
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	73.36	74.15
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	73.36	73.99
Solyc07g039200.2.1	Tomato	nucleus	71.88	73.59
CDY48712	Canola	plastid	72.94	73.25
CDY03357	Canola	plastid	73.15	73.15
CDY21659	Canola	nucleus	72.3	72.3
CDX81935	Canola	nucleus	72.3	72.0
Bra031087.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.23	71.96
Bra040681.1-P	Field mustard	cytosol	54.97	71.82
Solyc05g014090.1.1	Tomato	mitochondrion	58.14	69.27
Os11t0134500-01	Rice	nucleus	67.44	68.6
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	54.97	68.6
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	66.6	68.03
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	68.71	67.43
TraesCS4B01G131200.1	Wheat	nucleus	68.71	67.43
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	68.71	67.43
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	68.08	67.22
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	68.5	67.22
CDX82701	Canola	nucleus	54.97	67.01
Zm00001d010850_P003	Maize	plasma membrane	68.08	66.94
CDY35872	Canola	cytosol, nucleus, plastid	47.78	66.47
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	67.02	66.32
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	64.9	63.56
OQU82815	Sorghum	mitochondrion	61.52	63.4
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.69	63.35
KRH58491	Soybean	nucleus	23.47	26.12
KRH42369	Soybean	nucleus	23.47	26.12
KRH24317	Soybean	nucleus	21.35	25.19
KRH29002	Soybean	nucleus	21.14	24.81
KRH23320	Soybean	endoplasmic reticulum	22.62	23.31
KRH12388	Soybean	nucleus	23.68	22.05
KRH37388	Soybean	nucleus	23.68	21.83
KRH10009	Soybean	cytosol, mitochondrion, nucleus	17.76	21.27
KRH11018	Soybean	cytosol	13.32	20.45
KRH21268	Soybean	cytosol	13.74	20.44
Os12t0132300-02	Rice	cytosol	0.85	2.19
Os11t0134400-00	Rice	cytosol	0.85	2.19

Protein Annotations

EntrezGene:100799936	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02003292	EnsemblPlantsGene:GLYMA_05G147800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Histone-bd_RBBP4_N	UniProt:I1K3M3	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH58776
ProteinID:KRH58776	ProteinID:KRH58776.1	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22850	PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023C4F3A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:34204851..34209035

Molecular Weight (calculated)

52035.5 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.523

Length

473 amino acids

Sequence
(BLAST)

001: MTRGIKHRQK AKSKKKVSKK ESGSSSSLAP EIPAKVWQPG VDKLEEGEEL QCDPSAYNSL HAFHIGWPCL SFDILRDSLG LVRKEFPHTV YFMAGTQAEK
101: PSWNSIGIFK VSNITGKRRE PVPKLGTDDT EMDGEDSDSD DDSEDEEGGA QGPSLQLRKV AHQGCVNRIR SMPQNPHICA AWADTGHVQV WDLNSHLNAL
201: AESETEGVQG VAAVFNQDPL YKFKHKDEGY AIDWSPLVPG RLASGDCNNC IYLWEPTSAG TWNVDNAPFT GHTASVEDLQ WSPTEPDVFA SCSVDGNIAI
301: WDTRLGKSPA ASFKAHNADV NVMSWNRLAS CMLASGSDDG TISIRDLRLL KEGDSVVAHF EYHKHPITSI EWSPHEASSL AVSSSDNQLT IWDLSLEKDE
401: EEEAEFKAKT KEQVNAPEDL PPQLLFIHQG QKDLKELHWH AQIPGMIVST AADGFNILMP SNIQSTLPSD GAV

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.