Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21268 | Soybean | cytosol | 96.75 | 93.71 |
| PGSC0003DMT400023242 | Potato | cytosol | 83.44 | 81.33 |
| PGSC0003DMT400022498 | Potato | cytosol | 82.79 | 80.7 |
| Solyc03g062940.2.1 | Tomato | cytosol | 82.47 | 80.38 |
| CDY43325 | Canola | cytosol | 80.84 | 78.55 |
| AT1G29260.1 | Thale cress | cytosol | 80.84 | 78.55 |
| Bra032295.1-P | Field mustard | cytosol | 80.52 | 78.23 |
| CDX99799 | Canola | cytosol | 80.52 | 78.23 |
| Bra010844.1-P | Field mustard | cytosol | 80.19 | 77.92 |
| CDY50786 | Canola | cytosol | 80.19 | 77.92 |
| CDX90175 | Canola | cytosol | 79.87 | 77.6 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 74.68 | 72.33 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 85.06 | 67.18 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 62.34 | 59.81 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 61.36 | 59.62 |
| Os02t0245100-01 | Rice | cytosol, golgi, plastid | 62.01 | 59.32 |
| Zm00001d016170_P001 | Maize | cytosol | 61.36 | 59.25 |
| GSMUA_Achr10P... | Banana | mitochondrion | 48.38 | 46.56 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 37.34 | 35.71 |
| KRH29002 | Soybean | nucleus | 25.32 | 19.35 |
| KRH24317 | Soybean | nucleus | 24.68 | 18.95 |
| KRH42369 | Soybean | nucleus | 21.75 | 15.76 |
| KRH58491 | Soybean | nucleus | 21.75 | 15.76 |
| KRH23320 | Soybean | endoplasmic reticulum | 20.78 | 13.94 |
| KRH58776 | Soybean | nucleus | 20.45 | 13.32 |
| KRH42676 | Soybean | nucleus | 20.45 | 12.75 |
| KRH12388 | Soybean | nucleus | 20.78 | 12.6 |
| KRH37388 | Soybean | nucleus | 20.78 | 12.48 |
| KRH10009 | Soybean | cytosol, mitochondrion, nucleus | 15.26 | 11.9 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | UniProt:A0A0R0FXL8 | EMBL:ACUP02009171 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_15G083100 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EnsemblPlants:KRH11018 | ProteinID:KRH11018 | ProteinID:KRH11018.1 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF183 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0006EDC485 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
hypothetical protein
Coordinates
chr15:+:6349388..6353041
Molecular Weight (calculated)
34529.6 Da
IEP (calculated)
5.018
GRAVY (calculated)
-0.122
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVFKTPFNG YSVKFSPFYE NRLAVATAQN FGILGNGRLH VLDLSADPSL PIGELAAYDT ADGIYDVSWS ESHDSIVIAA VADGSVKLYD LALPPTSNPI
101: RSFQEHTREV HSADYNPVRR DSFLSSSWDD TVKLWTLDRP TSVRTFKEHA YCVYSAVWNP RHADVFASAS GDCTLRVWDV REPGSTMILP GHEFEILACD
201: WNKYDECVIA TASVDKRFPL VCLNGHGYAV RKVKFSPHVR NLMVSCSYDM TVCVWDFMVE DALVSRYDHH TEFAVGVDMS VLVEGLMAST GWDELVYVWQ
301: HGTDPRAP
101: RSFQEHTREV HSADYNPVRR DSFLSSSWDD TVKLWTLDRP TSVRTFKEHA YCVYSAVWNP RHADVFASAS GDCTLRVWDV REPGSTMILP GHEFEILACD
201: WNKYDECVIA TASVDKRFPL VCLNGHGYAV RKVKFSPHVR NLMVSCSYDM TVCVWDFMVE DALVSRYDHH TEFAVGVDMS VLVEGLMAST GWDELVYVWQ
301: HGTDPRAP
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.