CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25112	Soybean	plastid	85.86	86.29
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	63.13	76.69
Bra037609.1-P	Field mustard	plastid	75.25	76.02
CDY20339	Canola	plastid	75.25	76.02
VIT_06s0061g00770.t01	Wine grape	plastid	74.75	75.9
CDY29728	Canola	plastid	74.75	75.51
AT3G44890.1	Thale cress	plastid	71.72	72.08
PGSC0003DMT400001214	Potato	plastid	69.19	71.35
Solyc11g066410.1.1	Tomato	plastid	69.19	71.35
Os02t0822600-01	Rice	plastid	60.1	63.64
TraesCS6B01G450500.1	Wheat	plastid	57.58	59.69
EES07707	Sorghum	plastid	57.58	58.76
TraesCS6D01G390000.1	Wheat	plastid	57.58	57.87
TraesCS6A01G406500.1	Wheat	plastid	56.57	55.72
HORVU6Hr1G093030.1	Barley	plastid	57.58	53.02
Zm00001d018412_P001	Maize	plastid	18.18	39.56

Protein Annotations

MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	EMBL:ACUP02007036	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G192500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:I1LKZ0	InterPro:IPR036791	InterPro:IPR036935	EnsemblPlants:KRH30554	ProteinID:KRH30554	ProteinID:KRH30554.1
HAMAP:MF_00503	PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651	PANTHER:PTHR21368	PANTHER:PTHR21368:SF18
InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf	InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf
InterPro:Ribosomal_L9_bac/chp	SUPFAM:SSF55653	SUPFAM:SSF55658	TIGRFAMs:TIGR00158	UniParc:UPI00023CCC79	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:26564447..26567750

Molecular Weight (calculated)

22213.2 Da

IEP (calculated)

10.621

GRAVY (calculated)

-0.339

Length

198 amino acids

Sequence
(BLAST)

001: MASALSSLSS TSSSLLQHSF TGNSKAPPTT QFPNKNVRFS VFAQKKAKKL RKIILKEDVA YVGKQGQLLD VKAGFFRNYL LPMGKAQLVT PQLLKEMKIE
101: EERIEAEKKR VKEEAQQLAL IFETVGAFKV KRKGGKGKQI FGSVTAQDLV DIIKAQLQRE VDKRIVDLPE IRETGEYIAE LKLHPEVTAR VRVNVFAN

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.