Factsheet for Solyc11g066410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001214	Potato	plastid	97.92	97.92
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	61.98	73.01
VIT_06s0061g00770.t01	Wine grape	plastid	72.4	71.28
Bra037609.1-P	Field mustard	plastid	72.4	70.92
CDY20339	Canola	plastid	72.4	70.92
CDY29728	Canola	plastid	71.88	70.41
KRH30554	Soybean	nucleus, plastid	71.35	69.19
KRH25112	Soybean	plastid	69.79	68.02
AT3G44890.1	Thale cress	plastid	68.75	67.01
Os02t0822600-01	Rice	plastid	60.94	62.57
TraesCS6B01G450500.1	Wheat	plastid	59.9	60.21
TraesCS6D01G390000.1	Wheat	plastid	61.46	59.9
EES07707	Sorghum	plastid	60.42	59.79
TraesCS6A01G406500.1	Wheat	plastid	58.85	56.22
HORVU6Hr1G093030.1	Barley	plastid	60.94	54.42
Zm00001d018412_P001	Maize	plastid	18.23	38.46

Protein Annotations

MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036791	InterPro:IPR036935	UniProt:K4D9P9	HAMAP:MF_00503
PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651	PANTHER:PTHR21368	PANTHER:PTHR21368:SF18	InterPro:Ribosomal_L9
InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf	InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	InterPro:Ribosomal_L9_bac/chp
SUPFAM:SSF55653	SUPFAM:SSF55658	EnsemblPlantsGene:Solyc11g066410.1	EnsemblPlants:Solyc11g066410.1.1	TIGRFAMs:TIGR00158	UniParc:UPI0002769E34
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:52190265..52193260

Molecular Weight (calculated)

21625.5 Da

IEP (calculated)

10.392

GRAVY (calculated)

-0.340

Length

192 amino acids

Sequence
(BLAST)

001: MASWGSSSCL QNYSLTKNPF SETVKFSERT SILTIVAQKK AKKVRKIILK EDISQLGKKG DLLDVKAGFF RNYLLPLGKA QIVTAALIKE MKMEDEKIEA
101: EKQRVKDEAQ QLARIFETIG AFKVKRKGGK GKQIFGSVTA QDLVDIIKAQ IQRDVDKKIV NLPEIRETGE YVAELKLHPE VTARVRLTVY AN

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.