Factsheet for Os02t0822600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G450500.1	Wheat	plastid	84.49	82.72
TraesCS6D01G390000.1	Wheat	plastid	86.1	81.73
EES07707	Sorghum	plastid	84.49	81.44
TraesCS6A01G406500.1	Wheat	plastid	83.42	77.61
HORVU6Hr1G093030.1	Barley	plastid	85.03	73.95
Zm00001d018412_P001	Maize	plastid	34.76	71.43
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	59.36	68.1
Bra037609.1-P	Field mustard	plastid	65.78	62.76
CDY20339	Canola	plastid	65.78	62.76
CDY29728	Canola	plastid	65.24	62.24
VIT_06s0061g00770.t01	Wine grape	plastid	63.64	61.03
Solyc11g066410.1.1	Tomato	plastid	62.57	60.94
PGSC0003DMT400001214	Potato	plastid	62.03	60.42
KRH30554	Soybean	nucleus, plastid	63.64	60.1
AT3G44890.1	Thale cress	plastid	63.1	59.9
KRH25112	Soybean	plastid	63.1	59.9

Protein Annotations

MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	EntrezGene:4331189	EMBL:AK058369	EMBL:AK071751
EMBL:AK104610	ProteinID:BAD22896.1	ProteinID:BAF10475.2	ProteinID:BAS81651.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009941	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036791	InterPro:IPR036935	HAMAP:MF_00503
EnsemblPlantsGene:Os02g0822600	EnsemblPlants:Os02t0822600-01	PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651	PANTHER:PTHR21368
PANTHER:PTHR21368:SF18	UniProt:Q6KA00	InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf
InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	InterPro:Ribosomal_L9_bac/chp	SUPFAM:SSF55653	SUPFAM:SSF55658	TIGRFAMs:TIGR00158
UniParc:UPI00003B0496	RefSeq:XP_015624692.1	SEG:seg	:	:	:

Description

Similar to 50S ribosomal protein L9. (Os02t0822600-01);Non-protein coding transcript. (Os02t0822600-02)

Coordinates

chr2:-:35320487..35322965

Molecular Weight (calculated)

20785.4 Da

IEP (calculated)

10.605

GRAVY (calculated)

-0.332

Length

187 amino acids

Sequence
(BLAST)

001: MASTLAWSSA ASSSAPSSRL PPRRSPSLVV VAQGKVKKYR QVILTDDIAE VGKKGDTLKV RAGFYRNFLL PKGKATLLTP EVLKEMQVEQ ERIDAEKKRV
101: KEEAQQLARV FETIGAFKVP RKGGKGKQIF GSVTAQDLVD IIKSQLNRDV DKRLVTVPEI REIGEYIAEI KLHPEVTAQV RLTVYAK

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.