Factsheet for TraesCS6B01G450500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 22160430
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G390000.1	Wheat	plastid	97.91	94.92
TraesCS6A01G406500.1	Wheat	plastid	94.24	89.55
HORVU6Hr1G093030.1	Barley	plastid	96.86	86.05
EES07707	Sorghum	plastid	86.39	85.05
Os02t0822600-01	Rice	plastid	82.72	84.49
Zm00001d018412_P001	Maize	plastid	36.13	75.82
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	57.59	67.48
Bra037609.1-P	Field mustard	plastid	62.3	60.71
CDY20339	Canola	plastid	62.3	60.71
VIT_06s0061g00770.t01	Wine grape	plastid	61.78	60.51
CDY29728	Canola	plastid	61.78	60.2
Solyc11g066410.1.1	Tomato	plastid	60.21	59.9
AT3G44890.1	Thale cress	plastid	60.73	58.88
KRH25112	Soybean	plastid	60.21	58.38
PGSC0003DMT400001214	Potato	plastid	58.64	58.33
KRH30554	Soybean	nucleus, plastid	59.69	57.58

Protein Annotations

MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036791	InterPro:IPR036935	HAMAP:MF_00503	PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651
PANTHER:PTHR21368	PANTHER:PTHR21368:SF18	InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf
InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	InterPro:Ribosomal_L9_bac/chp	SUPFAM:SSF55653	SUPFAM:SSF55658	TIGRFAMs:TIGR00158
EnsemblPlantsGene:TraesCS6B01G450500	EnsemblPlants:TraesCS6B01G450500.1	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:709218375..709220659

Molecular Weight (calculated)

21553.4 Da

IEP (calculated)

10.520

GRAVY (calculated)

-0.403

Length

191 amino acids

Sequence
(BLAST)

001: MASPSCASTL PWTAAAFSYP RRLQTRRAPS LVIVAQGRVK KYRQVILKDD IDEISGKKGD TMKVRAGFYR NFLLPKGKAT LLTPDVLKEM QLEQERIEAE
101: KKRVKEEAQQ LARVFETIGA FKVPRKGGKG KQIFGSVTAQ DLVDIIKSQL NRDVDKRLVE VPEIREVGEY VAEIKLHPDV TAKVRLTVYA K

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.