Factsheet for VIT_06s0061g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	66.15	79.14
Bra037609.1-P	Field mustard	plastid	75.38	75.0
CDY20339	Canola	plastid	75.38	75.0
KRH30554	Soybean	nucleus, plastid	75.9	74.75
CDY29728	Canola	plastid	74.87	74.49
KRH25112	Soybean	plastid	74.36	73.6
Solyc11g066410.1.1	Tomato	plastid	71.28	72.4
AT3G44890.1	Thale cress	plastid	71.79	71.07
PGSC0003DMT400001214	Potato	plastid	69.23	70.31
Os02t0822600-01	Rice	plastid	61.03	63.64
TraesCS6B01G450500.1	Wheat	plastid	60.51	61.78
TraesCS6D01G390000.1	Wheat	plastid	60.51	59.9
EES07707	Sorghum	plastid	58.97	59.28
TraesCS6A01G406500.1	Wheat	plastid	58.46	56.72
HORVU6Hr1G093030.1	Barley	plastid	61.03	55.35
Zm00001d018412_P001	Maize	plastid	18.46	39.56

Protein Annotations

EntrezGene:100251697	wikigene:100251697	MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	ProteinID:CCB44215
ProteinID:CCB44215.1	ncoils:Coil	UniProt:F6GW80	EMBL:FN594957	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036791	InterPro:IPR036935
EntrezGene:LOC100251697	wikigene:LOC100251697	HAMAP:MF_00503	PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651
PANTHER:PTHR21368	PANTHER:PTHR21368:SF18	InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf
InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	InterPro:Ribosomal_L9_bac/chp	SUPFAM:SSF55653	SUPFAM:SSF55658	TIGR:TC51888
TIGR:TC53064	TIGRFAMs:TIGR00158	UniParc:UPI00015C9CDD	ArrayExpress:VIT_06s0061g00770	EnsemblPlantsGene:VIT_06s0061g00770	EnsemblPlants:VIT_06s0061g00770.t01
unigene:Vvi.1764	RefSeq:XP_002274311	RefSeq:XP_002274311.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:18292025..18298152

Molecular Weight (calculated)

22204.3 Da

IEP (calculated)

10.497

GRAVY (calculated)

-0.407

Length

195 amino acids

Sequence
(BLAST)

001: MASTAAALSW SSSTWLQTSV NNFNQPRKFS DNRMVFVVVA QKKAKKLRKI ILKEDVAELG KKGQLLDVKA GYYRNYLQPM GMAQIVTPLL LKEMRMEEER
101: IEAEKKRVKE EAQQMALMFE TVGAFKVKRK GGKGKQIFGS VTAQDLTDII KAQLQRDVDK RIVSLPEIRE TGEYVAELKL HPEVTARVRL NVYAN

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.