CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037609.1-P	Field mustard	plastid	99.49	99.49
CDY20339	Canola	plastid	99.49	99.49
AT3G44890.1	Thale cress	plastid	86.22	85.79
VIT_06s0061g00770.t01	Wine grape	plastid	74.49	74.87
KRH30554	Soybean	nucleus, plastid	75.51	74.75
KRH25112	Soybean	plastid	75.0	74.62
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	61.73	74.23
PGSC0003DMT400001214	Potato	plastid	70.41	71.88
Solyc11g066410.1.1	Tomato	plastid	70.41	71.88
Os02t0822600-01	Rice	plastid	62.24	65.24
TraesCS6B01G450500.1	Wheat	plastid	60.2	61.78
EES07707	Sorghum	plastid	60.2	60.82
TraesCS6D01G390000.1	Wheat	plastid	60.2	59.9
TraesCS6A01G406500.1	Wheat	plastid	58.67	57.21
HORVU6Hr1G093030.1	Barley	plastid	60.2	54.88
Zm00001d018412_P001	Maize	plastid	19.39	41.76

Protein Annotations

MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	GO:A0A078GYR5	UniProt:A0A078GYR5	EnsemblPlants:CDY29728
ProteinID:CDY29728	ProteinID:CDY29728.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00043539001
InterPro:IPR036791	InterPro:IPR036935	HAMAP:MF_00503	PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651
PANTHER:PTHR21368	PANTHER:PTHR21368:SF18	InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf
InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	InterPro:Ribosomal_L9_bac/chp	SUPFAM:SSF55653	SUPFAM:SSF55658	TIGRFAMs:TIGR00158
UniParc:UPI0004EEA4EE	SEG:seg	:	:	:	:

Description

BnaAnng03500DBnaAnng03500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYR5]

Coordinates

chrLK032242:+:213116..214719

Molecular Weight (calculated)

21908.9 Da

IEP (calculated)

10.646

GRAVY (calculated)

-0.224

Length

196 amino acids

Sequence
(BLAST)

001: MASSSLSLSW SSSLCSSHTF NVVGNETLKV SQRRSTLEVV AQKKAKKLRK VILKEDVLDL GKQGQLLDVK AGFFRNFLLP TGKAQLMTPL LLKEMKMANE
101: RIEAEKQRVK EEALQLATVF ETVGAFKVKR KGGKGKQIFG SVTAQDLVDI IKAQLQRDID KRLVSLPEIR ETGEYIAELK LHPDVTARVR LNVFAN

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.