Factsheet for Zm00001d018412_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07707	Sorghum	plastid	91.21	42.78
TraesCS6B01G450500.1	Wheat	plastid	75.82	36.13
TraesCS6D01G390000.1	Wheat	plastid	75.82	35.03
Os02t0822600-01	Rice	plastid	71.43	34.76
TraesCS6A01G406500.1	Wheat	plastid	75.82	34.33
HORVU6Hr1G093030.1	Barley	plastid	75.82	32.09
Bra037609.1-P	Field mustard	plastid	41.76	19.39
CDY20339	Canola	plastid	41.76	19.39
CDY29728	Canola	plastid	41.76	19.39
AT3G44890.1	Thale cress	plastid	41.76	19.29
KRH25112	Soybean	plastid	40.66	18.78
VIT_06s0061g00770.t01	Wine grape	plastid	39.56	18.46
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	32.97	18.4
PGSC0003DMT400001214	Potato	plastid	38.46	18.23
Solyc11g066410.1.1	Tomato	plastid	38.46	18.23
KRH30554	Soybean	nucleus, plastid	39.56	18.18

Protein Annotations

Gene3D:3.40.5.10	MapMan:35.1	UniProt:A0A1D6HNM4	ProteinID:AQK75894.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036935	PFAM:PF01281	ScanProsite:PS00651	PANTHER:PTHR21368	InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N
InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	SUPFAM:SSF55658	UniParc:UPI00084583DE	EnsemblPlantsGene:Zm00001d018412	EnsemblPlants:Zm00001d018412_P001
EnsemblPlants:Zm00001d018412_T001	:	:	:	:	:

Description

50S ribosomal protein L9 chloroplastic

Coordinates

chr5:-:220251920..220252721

Molecular Weight (calculated)

9933.3 Da

IEP (calculated)

10.781

GRAVY (calculated)

-0.149

Length

91 amino acids

Sequence
(BLAST)

1: MASLSCASTL PWTPASYPRP SAGRCLTASR RAPSLVIVAQ GKVKKYRQVI LTDDIEEVGK KGDTLKVRAG FYRNFLLPKG KATLLTPEVL K

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.