Factsheet for PGSC0003DMT400001214

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066410.1.1	Tomato	plastid	97.92	97.92
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	61.46	72.39
Bra037609.1-P	Field mustard	plastid	72.4	70.92
CDY20339	Canola	plastid	72.4	70.92
CDY29728	Canola	plastid	71.88	70.41
VIT_06s0061g00770.t01	Wine grape	plastid	70.31	69.23
KRH30554	Soybean	nucleus, plastid	71.35	69.19
KRH25112	Soybean	plastid	69.79	68.02
AT3G44890.1	Thale cress	plastid	68.75	67.01
Os02t0822600-01	Rice	plastid	60.42	62.03
TraesCS6B01G450500.1	Wheat	plastid	58.33	58.64
TraesCS6D01G390000.1	Wheat	plastid	59.9	58.38
EES07707	Sorghum	plastid	58.85	58.25
TraesCS6A01G406500.1	Wheat	plastid	57.81	55.22
HORVU6Hr1G093030.1	Barley	plastid	59.38	53.02
Zm00001d018412_P001	Maize	plastid	18.23	38.46

Protein Annotations

EntrezGene:102606429	MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036791
InterPro:IPR036935	UniProt:M0ZI35	HAMAP:MF_00503	PFAM:PF01281	PFAM:PF03948	EnsemblPlantsGene:PGSC0003DMG400000456
PGSC:PGSC0003DMG400000456	EnsemblPlants:PGSC0003DMT400001214	ScanProsite:PS00651	PANTHER:PTHR21368	PANTHER:PTHR21368:SF18	InterPro:Ribosomal_L9
InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf	InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf	InterPro:Ribosomal_L9_bac/chp
SUPFAM:SSF55653	SUPFAM:SSF55658	TIGRFAMs:TIGR00158	UniParc:UPI00029507A7	RefSeq:XP_006349040.1	SEG:seg

Description

50S ribosomal protein L9, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400000456]

Coordinates

chr11:-:39238816..39243185

Molecular Weight (calculated)

21639.6 Da

IEP (calculated)

10.439

GRAVY (calculated)

-0.332

Length

192 amino acids

Sequence
(BLAST)

001: MASWGSSSCL QNYSLTKNPF SETVKFSERT SILTIVAQKK TKKVRKIILK EDISQLGKKG DLLDVKAGFF RNYLLPLGKA QIVTAALIKE MKMEDEKVEA
101: EKQRVKDEAQ QLARIFETIG AFKVKRKGGK GKQIFGSVTA QDLVDIIKAQ IQRDVDKKIV NLPEIRETGE YIAELKLHPE VTARVRLTVF AN

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.