CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30554	Soybean	nucleus, plastid	86.29	85.86
GSMUA_Achr9P23590_001	Banana	endoplasmic reticulum	62.94	76.07
Bra037609.1-P	Field mustard	plastid	75.13	75.51
CDY20339	Canola	plastid	75.13	75.51
CDY29728	Canola	plastid	74.62	75.0
VIT_06s0061g00770.t01	Wine grape	plastid	73.6	74.36
AT3G44890.1	Thale cress	plastid	72.08	72.08
PGSC0003DMT400001214	Potato	plastid	68.02	69.79
Solyc11g066410.1.1	Tomato	plastid	68.02	69.79
Os02t0822600-01	Rice	plastid	59.9	63.1
TraesCS6B01G450500.1	Wheat	plastid	58.38	60.21
TraesCS6D01G390000.1	Wheat	plastid	58.88	58.88
EES07707	Sorghum	plastid	57.87	58.76
TraesCS6A01G406500.1	Wheat	plastid	57.36	56.22
HORVU6Hr1G093030.1	Barley	plastid	57.87	53.02
Zm00001d018412_P001	Maize	plastid	18.78	40.66

Protein Annotations

MapMan:17.7.2.1.7	Gene3D:3.10.430.100	Gene3D:3.40.5.10	EMBL:ACUP02007206	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G081500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:I1LR95	InterPro:IPR036791	InterPro:IPR036935	EnsemblPlants:KRH25112	ProteinID:KRH25112	ProteinID:KRH25112.1
HAMAP:MF_00503	PFAM:PF01281	PFAM:PF03948	ScanProsite:PS00651	PANTHER:PTHR21368	PANTHER:PTHR21368:SF18
InterPro:Ribosomal_L9	InterPro:Ribosomal_L9/RNase_H1_N	InterPro:Ribosomal_L9_C	InterPro:Ribosomal_L9_C_sf	InterPro:Ribosomal_L9_N	InterPro:Ribosomal_L9_N_sf
InterPro:Ribosomal_L9_bac/chp	SUPFAM:SSF55653	SUPFAM:SSF55658	TIGRFAMs:TIGR00158	UniParc:UPI00023D0690	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:6451078..6454383

Molecular Weight (calculated)

22111.0 Da

IEP (calculated)

10.661

GRAVY (calculated)

-0.335

Length

197 amino acids

Sequence
(BLAST)

001: MASALSSLSS TSSSLLQHSF TGNSKAPITQ FPNKSARFSV FAQKKAKKLR KIILKEDVTD VGKQGQLLDV RAGFFRNYLL PMGKAQLVTP QLLKEMKIEE
101: ERIEAEKRRV KEEAQQLALI FETVGAFKVK RKGGKGKQIF GSVTAQDLVD IIKAQLQREV DKRIVDLPEI RETGEYIAEL KLHPEVTARV RVNVFAN

Best Arabidopsis Sequence Match ( AT3G44890.1 )
(BLAST)

001: MASSTALSLS WSSSPCWSHS FNGGANETLK VSERRFNFEV VSQKKAKKLR KVILKEDVTD LGKQGQLLDV KAGFFRNFLL PTGKAQLMTP LLLKELKMED
101: ERIEAEKQRV KEEAQQLAMV FQTVGAFKVK RKGGKGKLIF GSVTAQDLVD IIKSQLQKDI DKRLVSLPEI RETGEYIAEL KLHPDVTARV KINVFAN

Arabidopsis Description

RPL9RPL9 [Source:UniProtKB/TrEMBL;Acc:A0A178VBQ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.